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[172374_x_at]

Description W03D2.8 /REP_DB=WormBase Gene ID /WP=CE14520 /TR=O02120 /GB=AAC48259.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 6.9
(-2.4)
A 		7.2
(-2.4)
A 		2.3
(-3)
A 		49.8
(3)
A 		48
B 1.2
(-3)
A 		9.7
(-1.5)
A 		4.9
(-2.3)
A 		34.6
(3)
A 		33
C 10.6
(-1.6)
A 		13.8
(-1)
A 		1.7
(-3)
A 		38.7
(3)
A 		37
avr 6.2
(-2.5) 		10.2
(-1.9) 		3
(-3) 		41
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 21.4
(3)
A 		1
(-3)
A 		1.7
(-2.8)
A 		15.5
(1.3)
A 		1
(-3)
A 		2.7
(-2.5)
A 		20
B 10.5
(1.5)
A 		4.1
(-1.6)
A 		13.6
(3)
A 		1.1
(-3)
A 		5.2
(-1)
A 		6.5
(-0.4)
A 		13
C 1.2
(-3)
A 		15.5
(0.9)
A 		23
(3)
A 		4.7
(-2)
A 		2.1
(-2.8)
A 		1.7
(-2.9)
A 		22
avr 11
(1.9) 		6.9
(-0.5) 		12.8
(3) 		7.1
(-0.4) 		2.8
(-3) 		3.6
(-2.5) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.5
(-1.3)
A 		1.6
(-2.1)
A 		0.6
(-3)
A 		7.3
(3)
A 		7
B 0.4
(-3)
A 		2.4
(-1.3)
A 		1.1
(-2.4)
A 		7.4
(3)
A 		7
C 3.5
(-0.1)
A 		4
(0.5)
A 		0.6
(-3)
A 		6.5
(3)
A 		6
avr 2.1
(-1.8) 		2.7
(-1.2) 		0.8
(-3) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.9
(3)
A 		0.4
(-2.8)
A 		0.4
(-2.8)
A 		3.9
(3)
A 		0.3
(-3)
A 		0.7
(-2.3)
A 		4
B 3.6
(3)
A 		1.4
(-1)
A 		3.3
(2.5)
A 		0.3
(-3)
A 		2.1
(0.3)
A 		2.4
(0.8)
A 		3
C 0.4
(-3)
A 		4.7
(1.7)
A 		5.9
(3)
A 		0.9
(-2.5)
A 		0.7
(-2.7)
A 		0.6
(-2.8)
A 		6
avr 2.6
(1.4) 		2.2
(0.3) 		3.2
(3) 		1.7
(-1.1) 		1
(-3) 		1.2
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172374_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10903
Sequence Type Exemplar sequence
Representative Public ID W03D2.8 NCBI
Target Description W03D2.8 /REP_DB=WormBase Gene ID /WP=CE14520 /TR=O02120 /GB=AAC48259.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) W03D2.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W03D2.8 W03D2.8 /REP_DB=WormBase Gene ID /WP=CE14520 /TR=O02120 /GB=AAC48259.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071998 2/11 Cross Hyb Matching Probes A 
SNAP00000017569 2/11 Cross Hyb Matching Probes None
GENEFINDER00000017571 2/11 Cross Hyb Matching Probes None
C52A10.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4063881-4064792(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172374_X_AT
aaatgcaaatacgtcgaattgatcgaatcggaattcaagaatttgactgttccgatggat
gggatattgaaagggaagatggagtggttgctactatactgtttgaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCAAATACGTCGAATTGATCG 2 119 23 Antisense
AATACGTCGAATTGATCGAATCGGA 338 173 30 Antisense
GTCGAATTGATCGAATCGGAATTCA 30 475 35 Antisense
GAATTCAAGAATTTGACTGTTCCGA 20 325 53 Antisense
GAATTTGACTGTTCCGATGGATGGG 543 325 61 Antisense
GATGGATGGGATATTGAAAGGGAAG 572 405 76 Antisense
AAAGGGAAGATGGAGTGGTTGCTAC 417 121 92 Antisense
GATGGAGTGGTTGCTACTATACTGT 291 407 100 Antisense
GGAGTGGTTGCTACTATACTGTTTG 312 517 103 Antisense
GTGGTTGCTACTATACTGTTTGAGG 512 489 106 Antisense
GGTTGCTACTATACTGTTTGAGGAG 512 507 108 Antisense
Sequence Source Affymetrix Proprietary Database