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[172373_x_at]

Description T24A6.2 /REP_DB=WormBase Gene ID /WP=CE14126 /TR=O61950 /GB=AAC17790.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 25.3
(-2.1)
A 		28.2
(-1.9)
A 		5.5
(-3)
A 		132.6
(3)
M 		127
B 37
(0.8)
A 		7.6
(-3)
A 		39.5
(1.1)
A 		54.6
(3)
A 		47
C 3.6
(-3)
A 		9.3
(-2.7)
A 		9.4
(-2.7)
A 		113.4
(3)
A 		110
avr 22
(-2.5) 		15
(-3) 		18.1
(-2.8) 		100.2
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 56.6
(3)
A 		15.5
(-3)
A 		55.4
(2.8)
P 		25.3
(-1.6)
A 		30.9
(-0.8)
A 		33.5
(-0.4)
A 		41
B 23
(-0.4)
A 		26.6
(0.1)
A 		44.7
(2.4)
A 		13.2
(-1.7)
A 		49
(3)
A 		2.9
(-3)
A 		46
C 20.7
(-2.9)
A 		71
(3)
A 		19.6
(-3)
A 		45
(-0)
A 		22.8
(-2.6)
P 		26.4
(-2.2)
A 		51
avr 33.4
(0.9) 		37.7
(2.3) 		39.9
(3) 		27.8
(-0.8) 		34.2
(1.2) 		20.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.2
(-0.4)
A 		6.1
(-1.4)
A 		1.4
(-3)
A 		19.4
(3)
M 		18
B 11.8
(3)
A 		1.9
(-3)
A 		9.1
(1.4)
A 		11.6
(2.9)
A 		10
C 1.2
(-3)
A 		2.7
(-2.5)
A 		3.3
(-2.3)
A 		19.1
(3)
A 		18
avr 7.4
(-1.3) 		3.6
(-3) 		4.6
(-2.5) 		16.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.4
(1.5)
A 		5.5
(-3)
A 		12.1
(3)
P 		6.4
(-2.2)
A 		9.3
(0.5)
A 		8.2
(-0.5)
A 		7
B 8
(-0.8)
A 		8.8
(-0.5)
A 		10.8
(0.1)
A 		3.5
(-2.2)
A 		19.9
(3)
A 		1.1
(-3)
A 		19
C 7.7
(-2)
A 		21.7
(3)
A 		5
(-3)
A 		9
(-1.6)
A 		7.4
(-2.1)
P 		8.8
(-1.6)
A 		17
avr 8.7
(-0.4) 		12
(2.8) 		9.3
(0.2) 		6.3
(-2.7) 		12.2
(3) 		6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172373_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14999
Sequence Type Exemplar sequence
Representative Public ID T24A6.2 NCBI
Target Description T24A6.2 /REP_DB=WormBase Gene ID /WP=CE14126 /TR=O61950 /GB=AAC17790.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071599 NCBI Caenorhabditis elegans T24A6.2 (T24A6.2) mRNA, complete cds. 11/11 None
T24A6.2 ENSEMBL cdna:known chromosome:CEL140:V:3557970:3558743:1 gene:T24A6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073819 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000019308 3/11 Cross Hyb Matching Probes None
GENEFINDER00000020027 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038621 1/11 Cross Hyb Matching Probes None
W02A11.6 3/11 Cross Hyb Matching Probes None
T07F10.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3557969-3558743(+) 92.31 100.0
Public Domain and Genome References
Gene Title
Ensembl T24A6.2
Entrez Gene 188822 Entrez gene
SwissProt O61950 EMBL-EBI
WormBase CE14126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17790 Hypothetical protein T24A6.2 [Caenorhabditis elegans] ref|NP_504000.1| T24A6.2 [Caenorhabditis elegans] 5.0E-89
blast CAB01245 Hypothetical protein T07F10.2 [Caenorhabditis elegans] ref|NP_506220.1| T07F10.2 [Caenorhabditis elegans] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:172373_X_AT
gcaattacatggttttttatcacaaattgtcaactgtatgtacatgttctaaacgtttca
gaaggttcaaaaaacttgatggggggtttaagcgaaccaacgcgggatggttatctactg
tcaccttcaaaatatttggaaaaattgaagatttttatgccttatgtgtttttgaaaaac
tgttctaatggaaatgaaaatggatatgaaatggatatgaaaaactttgttgtatttttt
tgcccaggagtgatttttggaaaaaaattttatcaaaatttttttcataagggcgaccct
tatgaaatttttgatatcacacaaatcacatttccgactcagcgtgatttttgtttgttt
tttacgacttctaataaaagcgagaaagaatttcaaaagaagctccaaactcagatggca
acgacactccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTACATGGTTTTTTATCACAA 338 323 19 Antisense
GTATGTACATGTTCTAAACGTTTCA 170 453 54 Antisense
GGTTTAAGCGAACCAACGCGGGATG 490 431 103 Antisense
ACGCGGGATGGTTATCTACTGTCAC 591 91 118 Antisense
GTTATCTACTGTCACCTTCAAAATA 505 447 128 Antisense
GATTTTTATGCCTTATGTGTTTTTG 447 429 168 Antisense
GTTGTATTTTTTTGCCCAGGAGTGA 69 437 247 Antisense
GGGCGACCCTTATGAAATTTTTGAT 23 489 309 Antisense
CAAATCACATTTCCGACTCAGCGTG 583 193 340 Antisense
GACTCAGCGTGATTTTTGTTTGTTT 59 375 354 Antisense
AACTCAGATGGCAACGACACTCCGA 574 139 426 Antisense
Sequence Source Affymetrix Proprietary Database