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[172372_at]

Description F15A8.1 /REP_DB=WormBase Gene ID /WP=CE09400 /TR=O02149 /GB=AAB52845.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 6.1
(-3)
A 		10.4
(-2.4)
A 		34.6
(1.1)
A 		47.7
(3)
P 		42
B 25.9
(-0.1)
A 		2.2
(-3)
A 		28.5
(0.3)
A 		50.5
(3)
P 		48
C 9.4
(-3)
A 		10
(-2.9)
A 		11.1
(-2.7)
A 		42.3
(3)
P 		33
avr 13.8
(-2) 		7.5
(-3) 		24.7
(-0.4) 		46.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 11.6
(-1.5)
A 		13.7
(-1.2)
A 		29.9
(1.4)
A 		2.2
(-3)
A 		40.2
(3)
P 		10.6
(-1.7)
A 		38
B 13.5
(-1)
A 		21.3
(0.3)
A 		1.9
(-3)
A 		4.7
(-2.5)
A 		36.9
(3)
P 		20.8
(0.2)
P 		35
C 3.6
(-2.7)
A 		32.2
(3)
P 		3.7
(-2.6)
A 		1.9
(-3)
A 		11
(-1.2)
A 		28.6
(2.3)
A 		30
avr 9.6
(-1.5) 		22.4
(1.4) 		11.8
(-1) 		2.9
(-3) 		29.4
(3) 		20
(0.9) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.2
(-3)
A 		2.3
(-2.9)
A 		9
(3)
A 		7
(1.2)
P 		7
B 8.3
(1.5)
A 		0.5
(-3)
A 		6.6
(0.6)
A 		10.8
(3)
P 		10
C 3.1
(-2.7)
A 		2.9
(-3)
A 		3.9
(-1.6)
A 		7.1
(3)
P 		4
avr 4.5
(-0.6) 		1.9
(-3) 		6.5
(1.3) 		8.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.1
(-2.2)
A 		4.9
(-0.8)
A 		6.5
(0.1)
A 		0.6
(-3)
A 		12.1
(3)
P 		2.6
(-2)
A 		12
B 4.7
(-1.3)
A 		7.1
(-0.3)
A 		0.5
(-3)
A 		1.2
(-2.7)
A 		15
(3)
P 		7.8
(0)
P 		15
C 1.3
(-2.4)
A 		9.8
(3)
P 		0.9
(-2.7)
A 		0.4
(-3)
A 		3.6
(-1)
A 		9.6
(2.9)
A 		9
avr 2.7
(-1.7) 		7.3
(1.2) 		2.6
(-1.8) 		0.7
(-3) 		10.2
(3) 		6.7
(0.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172372_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16770
Sequence Type Exemplar sequence
Representative Public ID F15A8.1 NCBI
Target Description F15A8.1 /REP_DB=WormBase Gene ID /WP=CE09400 /TR=O02149 /GB=AAB52845.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076362 NCBI Caenorhabditis elegans F15A8.1 (F15A8.1) mRNA, complete cds. 11/11 None
F15A8.1 ENSEMBL cdna:known chromosome:CEL140:X:4441418:4441631:1 gene:F15A8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4441418-4441632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A8.1
Entrez Gene 184517 Entrez gene
SwissProt O02149 EMBL-EBI
WormBase CE09400 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508763 F15A8.1 [Caenorhabditis elegans] gb|AAB52845.1| Hypothetical protein F15A8.1 [Caenorhabditis elegans] 2.0E-23
Sequence
Target Sequence 
>C. ELEGANS:172372_AT
atgcttacacagcgatctaataatcttcattttttgccagtgaacgccccgactacctta
ttacagttgggagaggtcataaaacttgttctaccattagtgttgaagtcaaaggccagg
aagacaaaagtggtcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTACACAGCGATCTAATAATC 584 41 13 Antisense
GATCTAATAATCTTCATTTTTTGCC 36 419 26 Antisense
TTCATTTTTTGCCAGTGAACGCCCC 625 687 38 Antisense
GCCCCGACTACCTTATTACAGTTGG 160 285 58 Antisense
CCGACTACCTTATTACAGTTGGGAG 632 263 61 Antisense
CTTATTACAGTTGGGAGAGGTCATA 133 223 69 Antisense
GAGGTCATAAAACTTGTTCTACCAT 487 401 85 Antisense
AAACTTGTTCTACCATTAGTGTTGA 72 125 94 Antisense
GTTCTACCATTAGTGTTGAAGTCAA 378 443 100 Antisense
GTGTTGAAGTCAAAGGCCAGGAAGA 677 481 112 Antisense
GGCCAGGAAGACAAAAGTGGTCGAA 436 543 126 Antisense
Sequence Source Affymetrix Proprietary Database