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[172370_x_at]

Description K07H8.4 /REP_DB=WormBase Gene ID /WP=CE18024 /TR=O45179 /GB=AAC04425.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 8.8
(1.1)
A 		0.9
(-3)
A 		12.6
(3)
A 		4.3
(-1.3)
A 		12
B 0.7
(-3)
A 		3.4
(-2.1)
A 		17.9
(3)
A 		17.4
(2.8)
A 		17
C 4.1
(-2.2)
A 		17
(1.5)
A 		1.5
(-3)
A 		22.1
(3)
A 		21
avr 4.5
(-3) 		7.1
(-1.5) 		10.7
(0.7) 		14.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1
(-1.3)
A 		1.5
(3)
A 		0.8
(-3)
A 		1
(-1.3)
A 		1
(-1.3)
A 		1
B 1.9
(-2.7)
A 		1.1
(-3)
A 		2.8
(-2.3)
A 		16.3
(3)
A 		1.6
(-2.8)
A 		1.5
(-2.8)
A 		15
C 0.6
(-3)
A 		0.6
(-3)
A 		32.7
(3)
A 		2.6
(-2.6)
A 		24.3
(1.4)
A 		12.8
(-0.7)
A 		32
avr 1.1
(-2.9) 		0.9
(-3) 		12.3
(3) 		6.6
(-0) 		9
(1.3) 		5.1
(-0.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 3.2
(2.8)
A 		0.2
(-3)
A 		3.3
(3)
A 		0.6
(-2.2)
A 		3
B 0.2
(-3)
A 		0.8
(-2.1)
A 		4.2
(3)
A 		3.7
(2.3)
A 		4
C 1.4
(-1.8)
A 		4.9
(3)
A 		0.5
(-3)
A 		3.7
(1.4)
A 		4
avr 1.6
(-3) 		2
(-0.8) 		2.7
(3) 		2.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.3
(3)
A 		0.3
(3)
A 		0.2
(-3)
A 		0.3
(3)
A 		0.3
(3)
A 		0
B 0.7
(-2.5)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		4.3
(3)
A 		0.7
(-2.5)
A 		0.5
(-2.8)
A 		4
C 0.2
(-3)
A 		0.2
(-3)
A 		8.3
(3)
A 		0.5
(-2.8)
A 		7.9
(2.7)
A 		4.3
(0)
A 		8
avr 0.4
(-2.8) 		0.3
(-3) 		3.1
(3) 		1.7
(-0) 		3
(2.8) 		1.7
(-0) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172370_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9520
Sequence Type Exemplar sequence
Representative Public ID K07H8.4 NCBI
Target Description K07H8.4 /REP_DB=WormBase Gene ID /WP=CE18024 /TR=O45179 /GB=AAC04425.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) K07H8.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07H8.4 K07H8.4 /REP_DB=WormBase Gene ID /WP=CE18024 /TR=O45179 /GB=AAC04425.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8275292-8275603(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172370_X_AT
caccaacattttcctttctttgttgcaaatatatcaatttgggacttttgaaacaaatga
aggatacttgagaagtggcatgtacctgacaaactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCAACATTTTCCTTTCTTTGTTG 232 203 18 Antisense
CAACATTTTCCTTTCTTTGTTGCAA 431 189 21 Antisense
CATTTTCCTTTCTTTGTTGCAAATA 628 215 24 Antisense
TTCCTTTCTTTGTTGCAAATATATC 228 701 28 Antisense
AAATATATCAATTTGGGACTTTTGA 193 115 44 Antisense
TATCAATTTGGGACTTTTGAAACAA 58 645 49 Antisense
GAAGGATACTTGAGAAGTGGCATGT 273 335 76 Antisense
ACTTGAGAAGTGGCATGTACCTGAC 130 105 83 Antisense
GAGAAGTGGCATGTACCTGACAAAC 133 391 87 Antisense
GAAGTGGCATGTACCTGACAAACTG 575 335 89 Antisense
AAGTGGCATGTACCTGACAAACTGG 110 159 90 Antisense
Sequence Source Affymetrix Proprietary Database