[Home] | [Total List]

[172369_x_at]

Description Y51B9A.3 /REP_DB=WormBase Gene ID /WP=CE19213 /TR=Q9XXC3 /GB=CAA19539.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 29      6grp_total > 96      4grp_total > 26      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 81.5
(-3)
P 		126.9
(3)
P 		105.3
(0.1)
M 		99.9
(-0.6)
P 		45
B 76.2
(-1.3)
P 		113.9
(3)
M 		75.8
(-1.4)
P 		61.4
(-3)
P 		53
C 68.7
(-3)
P 		84.8
(-2.2)
P 		69.6
(-3)
M 		196.4
(3)
P 		128
avr 75.5
(-3) 		108.5
(1.5) 		83.6
(-1.9) 		119.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 71.2
(-2.3)
P 		57.3
(-3)
P 		65.9
(-2.5)
P 		116.4
(0.1)
P 		168.3
(2.9)
P 		170.2
(3)
P 		113
B 88.9
(-2)
P 		121.2
(0)
P 		73.9
(-3)
A 		138.8
(1.2)
P 		121.1
(0)
P 		167.7
(3)
P 		94
C 121.4
(-0.8)
P 		88.9
(-2.1)
P 		64.9
(-3)
A 		143.3
(0)
P 		121.1
(-0.8)
P 		219.6
(3)
P 		155
avr 93.8
(-1.7) 		89.1
(-1.9) 		68.2
(-3) 		132.8
(0.3) 		136.8
(0.5) 		185.8
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 29.7
(3)
P 		27.5
(2.1)
P 		27.5
(2.1)
M 		14.6
(-3)
P 		15
B 24.3
(1.5)
P 		28.1
(3)
M 		17.6
(-1.2)
P 		13.1
(-3)
P 		15
C 22.7
(-3)
P 		24.4
(-2)
P 		24.3
(-2.1)
M 		33.1
(3)
P 		10
avr 25.6
(2) 		26.7
(3) 		23.1
(-0.4) 		20.3
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 13.1
(-3)
P 		20.4
(-1.8)
P 		14.4
(-2.8)
P 		29.5
(-0.4)
P 		50.8
(3)
P 		41.4
(1.5)
P 		38
B 30.9
(-1.3)
P 		40.3
(0)
P 		17.9
(-3)
A 		36.8
(-0.5)
P 		49.2
(1.2)
P 		62.5
(3)
P 		45
C 45
(0)
P 		27.1
(-1.9)
P 		16.5
(-3)
A 		28.8
(-1.7)
P 		39.2
(-0.6)
P 		73.5
(3)
P 		57
avr 29.7
(-1.1) 		29.3
(-1.2) 		16.3
(-3) 		31.7
(-0.8) 		46.4
(1.2) 		59.1
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172369_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3368
Sequence Type Exemplar sequence
Representative Public ID Y51B9A.3 NCBI
Target Description Y51B9A.3 /REP_DB=WormBase Gene ID /WP=CE19213 /TR=Q9XXC3 /GB=CAA19539.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063606 NCBI Caenorhabditis elegans Y51B9A.3 (Y51B9A.3) mRNA, complete cds. 11/11 None
SNAP00000039076 ENSEMBL cdna:SNAP chromosome:CEL140:II:9405483:9406888:-1 10/11 None
GENEFINDER00000039081 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9405483:9406888:-1 10/11 None
Y51B9A.3 ENSEMBL cdna:known chromosome:CEL140:II:9405505:9407026:-1 gene:Y51B9A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062924 4/11 Cross Hyb Matching Probes None
SNAP00000016659 4/11 Cross Hyb Matching Probes None
GENEFINDER00000016667 4/11 Cross Hyb Matching Probes None
F18C5.4 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9405508-9406885(-) 100.0 100.0
chrII:6563804-6565095(-) 93.31 93.31
Public Domain and Genome References
Gene Title
Ensembl Y51B9A.3
Entrez Gene 174490 Entrez gene
SwissProt Q9XXC3 EMBL-EBI
WormBase CE19213 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19539 Hypothetical protein Y51B9A.3 [Caenorhabditis elegans] ref|NP_496007.1| Y51B9A.3 [Caenorhabditis elegans] 1.0E-148
blast AAM98031 Hypothetical protein F18C5.4 [Caenorhabditis elegans] ref|NP_495325.2| F18C5.4 [Caenorhabditis elegans] 1.0E-134
blast T16088 hypothetical protein F18C5.4 - Caenorhabditis elegans 1.0E-133
blast AAM98031 Hypothetical protein F18C5.4 [Caenorhabditis elegans] ref|NP_495325.2| F18C5.4 [Caenorhabditis elegans] 1.0E-124
blast T16088 hypothetical protein F18C5.4 - Caenorhabditis elegans 1.0E-124
blast CAA19539 Hypothetical protein Y51B9A.3 [Caenorhabditis elegans] ref|NP_496007.1| Y51B9A.3 [Caenorhabditis elegans] 1.0E-118
blast AAM98031 Hypothetical protein F18C5.4 [Caenorhabditis elegans] ref|NP_495325.2| F18C5.4 [Caenorhabditis elegans] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:172369_X_AT
gtcactgaaaaaccattgccacctcgtcgtccaaatactcagatggttgagttgactttc
acttatcgtggaggtgctgcaacagggattattattcatagaatggcagttgatccaaaa
actgtaactatttcaatggttcagtcggcttccaatgcgtgtcactatgtcaaaggtgga
gatattcttgtcaaagttaatgacatttatgttcttgatcgtgactctgctagaaaactt
ctctatgcgagtgtcaacaacacaaaaacggtacgtcttacattggaaagatccacaaat
actgatccactcggccctgctccactgcctcccgatggtgcacagagtactgctgttgga
gtgaagaaagctggaaattcagtgatgcttccacctccaaaaccaccccaaggaaaagcc
aacaagcagtttgatgtgcttcttccttctgatgttttggaaattatgaagacaaacaag
atttctacaagaaaccgtgcacgaatcctccatgtattatcaaatcagccgttgcaccag
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTGAAAAACCATTGCCACCTC 458 463 286 Antisense
GGTTGAGTTGACTTTCACTTATCGT 15 509 330 Antisense
CTTATCGTGGAGGTGCTGCAACAGG 492 221 347 Antisense
CAATGGTTCAGTCGGCTTCCAATGC 451 183 419 Antisense
GGCTTCCAATGCGTGTCACTATGTC 201 537 432 Antisense
TATGTTCTTGATCGTGACTCTGCTA 286 657 493 Antisense
ATCCACAAATACTGATCCACTCGGC 660 39 576 Antisense
GAAATTCAGTGATGCTTCCACCTCC 408 363 659 Antisense
TGCTTCTTCCTTCTGATGTTTTGGA 521 577 722 Antisense
TGCACGAATCCTCCATGTATTATCA 648 575 783 Antisense
TTATCAAATCAGCCGTTGCACCAGC 89 681 802 Antisense
Sequence Source Affymetrix Proprietary Database