[Home] | [Total List]

[172368_x_at]

Description R09D1.14 /REP_DB=WormBase Gene ID /WP=CE25072 /TR=Q9NAN7 /GB=CAB76726.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 4.4
(-3)
A 		51.6
(3)
A 		16.3
(-1.5)
A 		32.4
(0.6)
A 		47
B 25.5
(3)
A 		5.3
(-1.9)
A 		0.9
(-3)
A 		13.2
(-0)
A 		25
C 2.2
(-3)
A 		25.1
(-1.1)
A 		18.4
(-1.6)
A 		73.7
(3)
A 		72
avr 10.7
(-3) 		27.3
(0.4) 		11.9
(-2.8) 		39.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 4.1
(-2.6)
A 		4
(-2.7)
A 		32.3
(3)
A 		2.3
(-3)
A 		5.7
(-2.3)
A 		2.9
(-2.9)
A 		30
B 3.9
(-2.8)
A 		7.3
(-2)
A 		31.7
(3)
A 		6.2
(-2.3)
A 		4.2
(-2.7)
A 		2.7
(-3)
A 		29
C 2.5
(-2.9)
A 		32
(0.7)
A 		50.8
(3)
A 		7.2
(-2.4)
A 		2
(-3)
A 		2
(-3)
A 		49
avr 3.5
(-2.8) 		14.4
(-1) 		38.3
(3) 		5.2
(-2.5) 		4
(-2.7) 		2.5
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(-3)
A 		11.2
(3)
A 		4.3
(-1.3)
A 		4.7
(-1.1)
A 		10
B 8.1
(3)
A 		1.3
(-2.2)
A 		0.2
(-3)
A 		2.8
(-1)
A 		8
C 0.7
(-3)
A 		7.2
(0.3)
A 		6.4
(-0.1)
A 		12.4
(3)
A 		12
avr 3.5
(-3) 		6.6
(3) 		3.6
(-2.8) 		6.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		1.4
(-2.3)
A 		7
(3)
A 		0.6
(-3)
A 		1.7
(-2)
A 		0.7
(-2.9)
A 		6
B 1.3
(-2.7)
A 		2.4
(-1.7)
A 		7.7
(3)
A 		1.6
(-2.5)
A 		1.7
(-2.4)
A 		1
(-3)
A 		7
C 0.9
(-2.9)
A 		9.8
(1.5)
A 		12.9
(3)
A 		1.5
(-2.6)
A 		0.6
(-3)
A 		0.7
(-3)
A 		12
avr 1
(-2.9) 		4.5
(-0.4) 		9.2
(3) 		1.2
(-2.7) 		1.3
(-2.6) 		0.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172368_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3821
Sequence Type Exemplar sequence
Representative Public ID R09D1.14 NCBI
Target Description R09D1.14 /REP_DB=WormBase Gene ID /WP=CE25072 /TR=Q9NAN7 /GB=CAB76726.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063627 NCBI Caenorhabditis elegans R09D1.14 (R09D1.14) mRNA, complete cds. 11/11 None
R09D1.14 ENSEMBL cdna:known chromosome:CEL140:II:9458930:9459471:-1 gene:R09D1.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063628 5/11 Cross Hyb Matching Probes A 
NM_063625 3/11 Cross Hyb Matching Probes A 
SNAP00000010206 3/11 Cross Hyb Matching Probes None
SNAP00000010209 6/11 Cross Hyb Matching Probes None
GENEFINDER00000010215 3/11 Cross Hyb Matching Probes None
GENEFINDER00000010218 8/11 Cross Hyb Matching Probes None
R09D1.6 3/11 Cross Hyb Matching Probes A 
R09D1.8 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9458926-9459468(-) 100.0 100.0
chrII:9460798-9461337(-) 97.57 97.57
Public Domain and Genome References
Gene Title
Ensembl R09D1.14
Entrez Gene 187741 Entrez gene
SwissProt Q9NAN7 EMBL-EBI
WormBase CE25072 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76726 Hypothetical protein R09D1.14 [Caenorhabditis elegans] ref|NP_496028.1| R09D1.14 [Caenorhabditis elegans] 2.0E-69
blast CAA93868 Hypothetical protein R09D1.8 [Caenorhabditis elegans] ref|NP_496029.1| R09D1.8 [Caenorhabditis elegans] 1.0E-58
blast CAA93866 Hypothetical protein R09D1.6 [Caenorhabditis elegans] ref|NP_496026.1| R09D1.6 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.0E-33
Sequence
Target Sequence 
>C. ELEGANS:172368_X_AT
gagcctacgagaacatgctccgagaatcagcaaaaatttcttaaatgtttcaggcactcc
tactgtgacaagtatctcttcaactgttgccgcgtctacatatccagcaacgccaggttg
taacaaacggataattggatattattttgcaacacaaacttctgttatcacaagtgatca
agtttcaaatctgacacatgcagtttttgcatttgtcaatattacttcagatggacaatt
acaaattgacggtgatttggcgaaaaacagatttacgaatttgatagaaatagcaaaaca
gcaaactccacaagtcaaagttatgatatcaattggtggaaacgacaattccaacaactt
caagccggttttaagtagtcccgacagaaaaaaattgttcatcaattccacagtatcatt
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCTACGAGAACATGCTCCGAGA 610 385 15 Antisense
GAACATGCTCCGAGAATCAGCAAAA 478 351 25 Antisense
AATGTTTCAGGCACTCCTACTGTGA 30 161 58 Antisense
GACAAGTATCTCTTCAACTGTTGCC 470 365 81 Antisense
TCTACATATCCAGCAACGCCAGGTT 556 611 109 Antisense
CAAACTTCTGTTATCACAAGTGATC 673 191 169 Antisense
AAATCTGACACATGCAGTTTTTGCA 606 117 201 Antisense
ATTTGTCAATATTACTTCAGATGGA 53 19 225 Antisense
AGCAAAACAGCAAACTCCACAAGTC 85 77 306 Antisense
CGACAATTCCAACAACTTCAAGCCG 614 249 357 Antisense
GTTCATCAATTCCACAGTATCATTC 12 445 411 Antisense
Sequence Source Affymetrix Proprietary Database