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[172367_x_at]

Description F36H5.1 /REP_DB=WormBase Gene ID /WP=CE27156 /TR=P91300 /GB=AAK31520.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 44      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 81      6grp_total > 20      4grp_total > 23      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 286.7
(2)
P 		196.8
(-2)
P 		174
(-3)
P 		309.9
(3)
P 		136
B 353.9
(1.3)
P 		229.5
(-2.1)
P 		195
(-3)
P 		415
(3)
P 		220
C 515.1
(3)
P 		221.5
(-3)
P 		231.9
(-2.8)
P 		392.9
(0.5)
P 		294
avr 385.2
(3) 		215.9
(-2.5) 		200.3
(-3) 		372.6
(2.6) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 194.3
(-2.2)
P 		442.8
(3)
P 		316.1
(0.3)
P 		320.8
(0.4)
P 		157.9
(-3)
P 		266.3
(-0.7)
P 		285
B 255.7
(-1.2)
P 		329.5
(0.3)
P 		462.4
(3)
P 		224.2
(-1.9)
P 		169.9
(-3)
P 		285.1
(-0.6)
P 		293
C 236.3
(-1.2)
P 		389.4
(3)
P 		286.3
(0.2)
P 		245.5
(-1)
P 		171.9
(-3)
P 		296.6
(0.4)
P 		218
avr 228.8
(-1.3) 		387.2
(3) 		354.9
(2.1) 		263.5
(-0.4) 		166.6
(-3) 		282.7
(0.2) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 104.4
(3)
P 		42.7
(-3)
P 		45.5
(-2.7)
P 		45.4
(-2.7)
P 		62
B 112.9
(3)
P 		56.7
(-2)
P 		45.2
(-3)
P 		88.4
(0.8)
P 		68
C 170.5
(3)
P 		63.7
(-3)
P 		80.8
(-2)
P 		66.3
(-2.9)
P 		107
avr 129.3
(3) 		54.4
(-3) 		57.2
(-2.8) 		66.7
(-2) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 35.8
(-3)
P 		157.5
(3)
P 		68.8
(-1.4)
P 		81.4
(-0.8)
P 		47.6
(-2.4)
P 		64.8
(-1.6)
P 		122
B 89
(0.4)
P 		109.7
(2.7)
P 		112.3
(3)
P 		59.4
(-3)
P 		69
(-1.9)
P 		106.3
(2.3)
P 		53
C 87.6
(0.3)
P 		118.8
(3)
P 		72.9
(-1)
P 		49.4
(-3)
P 		55.6
(-2.5)
P 		99.3
(1.3)
P 		69
avr 70.8
(-1.9) 		128.7
(3) 		84.7
(-0.7) 		63.4
(-2.5) 		57.4
(-3) 		90.1
(-0.2) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172367_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4664
Sequence Type Exemplar sequence
Representative Public ID F36H5.1 NCBI
Target Description F36H5.1 /REP_DB=WormBase Gene ID /WP=CE27156 /TR=P91300 /GB=AAK31520.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061674(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061674 NCBI Caenorhabditis elegans F36H5.1 (F36H5.1) mRNA, complete cds. 11/11 None
SNAP00000028526 ENSEMBL cdna:SNAP chromosome:CEL140:II:1772247:1774849:1 11/11 None
GENEFINDER00000028546 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1771657:1774849:1 11/11 None
F36H5.1.2 ENSEMBL cdna:known chromosome:CEL140:II:1771650:1774910:1 gene:F36H5.1 11/11 None
F36H5.1.1 ENSEMBL cdna:known chromosome:CEL140:II:1771650:1774943:1 gene:F36H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182203 7/11 Cross Hyb Matching Probes A 
NM_182204 7/11 Cross Hyb Matching Probes A 
NM_061675 1/11 Cross Hyb Matching Probes A 
NM_182202 1/11 Cross Hyb Matching Probes None
NM_061676 1/11 Cross Hyb Matching Probes A 
SNAP00000012039 1/11 Cross Hyb Matching Probes None
SNAP00000012040 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012054 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012056 1/11 Cross Hyb Matching Probes None
SNAP00000028525 7/11 Cross Hyb Matching Probes None
GENEFINDER00000028541 7/11 Cross Hyb Matching Probes None
F36H5.2b 7/11 Cross Hyb Matching Probes A 
F36H5.2c.2 7/11 Cross Hyb Matching Probes A 
F36H5.2c.1 7/11 Cross Hyb Matching Probes A 
C08F1.4a 1/11 Cross Hyb Matching Probes A 
C08F1.4b 1/11 Cross Hyb Matching Probes A 
C08F1.5 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1771970-1774848(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H5.1
Entrez Gene 173546 Entrez gene
SwissProt P91300 EMBL-EBI
WormBase CE27156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31520 Hypothetical protein F36H5.1 [Caenorhabditis elegans] ref|NP_494075.1| F36H5.1 [Caenorhabditis elegans] 0.0
blast T25744 hypothetical protein F36H5.1 - Caenorhabditis elegans 0.0
blast T25743 hypothetical protein F36H5.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.5E-7
Pfam IPR002083 EMBL-EBI MATH 5.3E-16
Pfam IPR002083 EMBL-EBI MATH 3.5E-39
Pfam IPR002083 EMBL-EBI MATH 8.9E-22
Pfam IPR002083 EMBL-EBI MATH 1.2E-36
Pfam IPR002083 EMBL-EBI MATH 3.5E-33
Pfam IPR002083 EMBL-EBI MATH 3.2E-9
Pfam IPR002083 EMBL-EBI MATH 3.5E-39
Pfam IPR002083 EMBL-EBI MATH 8.9E-22
Pfam IPR002083 EMBL-EBI MATH 1.2E-36
Pfam IPR002083 EMBL-EBI MATH 3.5E-33
Pfam IPR002083 EMBL-EBI MATH 5.3E-16
Pfam IPR002083 EMBL-EBI MATH 3.5E-39
Pfam IPR002083 EMBL-EBI MATH 8.9E-22
Pfam IPR002083 EMBL-EBI MATH 1.2E-36
Pfam IPR002083 EMBL-EBI MATH 3.5E-33
Sequence
Target Sequence 
>C. ELEGANS:172367_X_AT
aaagcccgattcgattggggattcgaaactcattagatgggaggacatgttggatcagta
tgcggtggaggatagtttaacagttgaagcacgtgtgaattttactctgctcatcgagcc
tcaaccagagtactcgttcataatgtgtcataccgtcaaaaaactatcaaatgttcgaga
aggagaatttcattttagcaaaacagagacgcattgtgatgctccatggagaatttcctt
gaaaaaagaagaagcgtgtattttgatatatctccattgtgacaaattattatccaacga
tgaaaactggtcgattcaagtcgaggttcaacttgttttggggtcagaaactgggagaac
tttaactgacaaggtcactcacattttcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCCGATTCGATTGGGGATTCG 150 121 1626 Antisense
GGACATGTTGGATCAGTATGCGGTG 217 525 1668 Antisense
GAAGCACGTGTGAATTTTACTCTGC 451 341 1711 Antisense
TTTACTCTGCTCATCGAGCCTCAAC 636 673 1726 Antisense
AGCCTCAACCAGAGTACTCGTTCAT 401 77 1742 Antisense
ACTCGTTCATAATGTGTCATACCGT 250 99 1757 Antisense
AAACAGAGACGCATTGTGATGCTCC 604 127 1826 Antisense
ATGCTCCATGGAGAATTTCCTTGAA 106 43 1844 Antisense
GAAGCGTGTATTTTGATATATCTCC 190 343 1876 Antisense
GAGGTTCAACTTGTTTTGGGGTCAG 477 49 1948 Antisense
GACAAGGTCACTCACATTTTCAATG 422 365 1993 Antisense
Sequence Source Affymetrix Proprietary Database