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[172366_x_at]

Description C17B7.9 /REP_DB=WormBase Gene ID /WP=CE16857 /TR=O45153 /GB=AAC04403.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2.7
(-3)
A 		34.2
(1)
A 		7.9
(-2.3)
A 		49.7
(3)
A 		47
B 3
(-3)
A 		6.1
(-1.4)
A 		10.8
(1)
A 		14.8
(3)
A 		12
C 39.3
(3)
A 		5.1
(-2.9)
A 		4.7
(-3)
A 		29.1
(1.2)
A 		35
avr 15
(-1.2) 		15.1
(-1.1) 		7.8
(-3) 		31.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 13.7
(-1.9)
A 		4.7
(-3)
A 		52.6
(3)
A 		10
(-2.3)
A 		41.6
(1.6)
A 		13.2
(-1.9)
A 		48
B 14.1
(-2)
A 		4.8
(-3)
A 		51.1
(1.9)
A 		37.1
(0.4)
A 		51.3
(2)
A 		61
(3)
A 		56
C 4.2
(-2.8)
A 		32.1
(1.1)
A 		2.7
(-3)
A 		45.8
(3)
A 		37.2
(1.8)
A 		32.1
(1.1)
A 		43
avr 10.7
(-3) 		13.9
(-2.4) 		35.5
(1.6) 		31
(0.7) 		43.4
(3) 		35.4
(1.5) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1
(-3)
A 		7.4
(3)
A 		2.1
(-2)
A 		7.3
(2.9)
A 		6
B 0.9
(-3)
A 		1.5
(-1.4)
A 		2.5
(1.4)
A 		3.1
(3)
A 		2
C 13
(3)
A 		1.5
(-3)
A 		1.7
(-2.9)
A 		4.9
(-1.2)
A 		12
avr 5
(2.8) 		3.5
(-0.2) 		2.1
(-3) 		5.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.5
(-2.6)
A 		1.7
(-3)
A 		11.5
(2.4)
A 		2.5
(-2.6)
A 		12.5
(3)
A 		3.2
(-2.2)
A 		11
B 4.9
(-2.1)
A 		1.6
(-3)
A 		12.4
(0.1)
A 		9.8
(-0.7)
A 		20.9
(2.5)
A 		22.8
(3)
A 		21
C 1.6
(-2.5)
A 		9.8
(1.8)
A 		0.7
(-3)
A 		9.2
(1.5)
A 		12
(3)
A 		10.8
(2.4)
A 		11
avr 3
(-3) 		4.4
(-2.3) 		8.2
(-0.4) 		7.2
(-0.9) 		15.1
(3) 		12.3
(1.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172366_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15767
Sequence Type Exemplar sequence
Representative Public ID C17B7.9 NCBI
Target Description C17B7.9 /REP_DB=WormBase Gene ID /WP=CE16857 /TR=O45153 /GB=AAC04403.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071522 NCBI Caenorhabditis elegans C17B7.9 (C17B7.9) mRNA, complete cds. 11/11 None
SNAP00000020306 ENSEMBL cdna:SNAP chromosome:CEL140:V:3330741:3331939:-1 11/11 None
GENEFINDER00000020316 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3330741:3331939:-1 11/11 None
C17B7.9 ENSEMBL cdna:known chromosome:CEL140:V:3330741:3331939:-1 gene:C17B7.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071498 2/11 Cross Hyb Matching Probes A 
SNAP00000028211 2/11 Cross Hyb Matching Probes None
GENEFINDER00000028230 2/11 Cross Hyb Matching Probes None
T28A11.18 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3330740-3331939(-) 100.0 100.0
chrV:3266654-3267874(-) 93.86 93.86
Public Domain and Genome References
Gene Title
Ensembl C17B7.9
Entrez Gene 182709 Entrez gene
SwissProt O45153 EMBL-EBI
WormBase CE16857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04403 Hypothetical protein C17B7.9 [Caenorhabditis elegans] ref|NP_503923.1| C17B7.9 [Caenorhabditis elegans] 1.0E-118
blast NP_503899 T28A11.18 [Caenorhabditis elegans] gb|AAC48130.1| Hypothetical protein T28A11.18 [Caenorhabditis elegans] 1.0E-107
blast AAB37587 Hypothetical protein T20D4.10 [Caenorhabditis elegans] ref|NP_503951.1| T20D4.10 [Caenorhabditis elegans] 1.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 1.2E-91
Sequence
Target Sequence 
>C. ELEGANS:172366_X_AT
tgataggattcctccaacttgccattattggaactgtgtttttgagtgttgtacataaag
cagttgcaactggagcacaagacgccggctgtactgatgaagaatcacttaggacacgtt
cttgtgacctagttctggccgatttcctcgaaaatagtggcaacctctacatgaaggata
aaaagaggctaaaggaatacaaggatgaatgccataacgtactcagttgttacaacaaaa
tcaaatgtttgggaacaaatggggaaaaaattccagcgattaagaatattggaaagcatt
gcagagctacggattacgtacacgatgattttgccaagtgtagtgacaaattgaatgcaa
agaaatcaacatgtttcgatgactgggacccaattccaaacaaagtcactactgaaaaag
tcccaaaaaaatttgaccagttgatgagtgagtcttgtaaaacatgttttggaaaagaca
actgcatgatgaaggaaattaaagaaacatgtggccaacaagaatgggacgccttccgaa
agcatttcataactctctctggtggatttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATAGGATTCCTCCAACTTGCCAT 638 563 14 Antisense
GAGTGTTGTACATAAAGCAGTTGCA 467 401 57 Antisense
CACAAGACGCCGGCTGTACTGATGA 159 195 89 Antisense
GACACGTTCTTGTGACCTAGTTCTG 550 365 126 Antisense
TAGTTCTGGCCGATTTCCTCGAAAA 174 641 143 Antisense
AAATAGTGGCAACCTCTACATGAAG 236 117 165 Antisense
GAATGCCATAACGTACTCAGTTGTT 406 329 220 Antisense
CATGTTTCGATGACTGGGACCCAAT 695 205 383 Antisense
AGAATGGGACGCCTTCCGAAAGCAT 567 75 534 Antisense
GAAAGCATTTCATAACTCTCTCTGG 436 359 551 Antisense
CATAACTCTCTCTGGTGGATTTTTC 428 213 561 Antisense
Sequence Source Affymetrix Proprietary Database