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[172364_x_at]

Description R08C7.1 /REP_DB=WormBase Gene ID /WP=CE07424 /TR=Q21845 /GB=AAC48072.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 82      6grp_total > 73      4grp_total > 56      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 8.1
(-3)
A 		166.6
(1.2)
P 		233.4
(3)
P 		7.5
(-3)
A 		226
B 64.2
(-3)
A 		197.1
(1.3)
P 		248.9
(3)
P 		65.5
(-3)
P 		185
C 7
(-3)
A 		173.2
(0.9)
P 		264.8
(3)
P 		41.4
(-2.2)
A 		258
avr 26.4
(-3) 		179
(1.1) 		249
(3) 		38.1
(-2.7) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 630
1 2 3 4 5 6 range
A 108.2
(-3)
A 		190.6
(-2.2)
P 		541.7
(1.1)
P 		736.3
(3)
P 		341.3
(-0.8)
P 		132.3
(-2.8)
P 		628
B 106
(-3)
P 		153.6
(-2.2)
P 		374.8
(1.5)
P 		468.1
(3)
P 		465.7
(3)
P 		184.8
(-1.7)
P 		362
C 157.3
(-3)
P 		156.7
(-3)
P 		328.4
(-0.5)
P 		565.7
(3)
P 		549.5
(2.8)
P 		232.7
(-1.9)
P 		409
avr 123.8
(-3) 		167
(-2.4) 		415
(0.7) 		590
(3) 		452.2
(1.2) 		183.3
(-2.2) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 2.9
(-2.8)
A 		36.2
(0.5)
P 		61
(3)
P 		1.1
(-3)
A 		60
B 20.5
(-2.1)
A 		48.7
(1.8)
P 		57.7
(3)
P 		14
(-3)
P 		44
C 2.3
(-3)
A 		49.8
(0.2)
P 		92.3
(3)
P 		7
(-2.7)
A 		90
avr 8.6
(-2.9) 		44.9
(0.6) 		70.3
(3) 		7.4
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 19.9
(-3)
A 		67.8
(-1.3)
P 		118
(0.5)
P 		186.7
(3)
P 		103
(-0)
P 		32.2
(-2.6)
P 		167
B 36.9
(-3)
P 		51.1
(-2.4)
P 		91
(-0.9)
P 		124
(0.4)
P 		189.2
(3)
P 		68.9
(-1.7)
P 		152
C 58.3
(-2.5)
P 		47.8
(-3)
P 		83.6
(-1.3)
P 		113.8
(0)
P 		177.8
(3)
P 		77.9
(-1.6)
P 		130
avr 38.4
(-3) 		55.6
(-2.1) 		97.5
(-0) 		141.5
(2.2) 		156.7
(3) 		59.7
(-1.9) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172364_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10702
Sequence Type Exemplar sequence
Representative Public ID R08C7.1 NCBI
Target Description R08C7.1 /REP_DB=WormBase Gene ID /WP=CE07424 /TR=Q21845 /GB=AAC48072.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068170 NCBI Caenorhabditis elegans R08C7.1 (R08C7.1) mRNA, complete cds. 11/11 None
R08C7.1 ENSEMBL cdna:known chromosome:CEL140:IV:4451869:4452012:1 gene:R08C7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4451874-4452018(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08C7.1
Entrez Gene 187695 Entrez gene
SwissProt Q21845 EMBL-EBI
WormBase CE07424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48072 Hypothetical protein R08C7.1 [Caenorhabditis elegans] ref|NP_500571.1| R08C7.1 [Caenorhabditis elegans] 1.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500571.1 1 4-26
R08C7.1 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:172364_X_AT
gcccactcgcattcataattttatgtcaatattctggaaatctgcttgtccaattcgttt
actacgtgctcgccgaatacgtgctcgaaaagttcgatcgaactccgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCACTCGCATTCATAATTTTATG 393 287 17 Antisense
CATAATTTTATGTCAATATTCTGGA 468 213 30 Antisense
GTCAATATTCTGGAAATCTGCTTGT 487 463 41 Antisense
GGAAATCTGCTTGTCCAATTCGTTT 212 527 52 Antisense
TGTCCAATTCGTTTACTACGTGCTC 279 553 63 Antisense
CCAATTCGTTTACTACGTGCTCGCC 95 277 66 Antisense
TTTACTACGTGCTCGCCGAATACGT 551 671 74 Antisense
TACTACGTGCTCGCCGAATACGTGC 687 645 76 Antisense
TGCTCGCCGAATACGTGCTCGAAAA 547 581 83 Antisense
CGCCGAATACGTGCTCGAAAAGTTC 529 255 87 Antisense
CGAAAAGTTCGATCGAACTCCGCCG 207 251 102 Antisense
Sequence Source Affymetrix Proprietary Database