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[172363_x_at]

Description F53A9.6 /REP_DB=WormBase Gene ID /WP=CE02766 /TR=Q20691 /GB=AAC46561.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 14      6grp_total > 07      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3364
1 2 3 4 range
A 5657.2
(3)
P 		3644.9
(-1.1)
P 		2741.5
(-3)
P 		5161.4
(2)
P 		2916
B 5803.5
(3)
P 		2880.3
(-2.2)
P 		2439.7
(-3)
P 		4641.6
(0.9)
P 		3364
C 5684.6
(3)
P 		3159.7
(-2)
P 		2625.5
(-3)
P 		4529.2
(0.7)
P 		3059
avr 5715.1
(3) 		3228.3
(-1.8) 		2602.2
(-3) 		4777.4
(1.2) 		3113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2809
1 2 3 4 5 6 range
A 5396.3
(3)
P 		4186
(0.4)
P 		3579.6
(-0.9)
P 		3459.7
(-1.1)
P 		2587
(-3)
P 		2914.2
(-2.3)
P 		2809
B 5223.7
(3)
P 		4040.6
(0.1)
P 		3572.4
(-1)
P 		2757.2
(-3)
P 		3147.3
(-2.1)
P 		3114.2
(-2.1)
P 		2467
C 5194.9
(3)
P 		3818.8
(-0.6)
P 		3686.9
(-0.9)
P 		3208.9
(-2.2)
P 		3112.4
(-2.4)
P 		2900
(-3)
P 		2295
avr 5271.6
(3) 		4015.1
(-0.2) 		3613
(-1.3) 		3141.9
(-2.5) 		2948.9
(-3) 		2976.1
(-2.9) 		2323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1495
1 2 3 4 range
A 2059.8
(3)
P 		791.2
(-2.7)
P 		716.7
(-3)
P 		755.5
(-2.8)
P 		1343
B 1850.7
(3)
P 		711.4
(-2.3)
P 		565.3
(-3)
P 		989.1
(-1)
P 		1285
C 1881.8
(3)
P 		908.4
(-2.2)
P 		915.1
(-2.2)
P 		763.7
(-3)
P 		1118
avr 1930.8
(3) 		803.7
(-2.6) 		732.4
(-3) 		836.1
(-2.5) 		1198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1280
1 2 3 4 5 6 range
A 994.8
(-0.8)
P 		1488.7
(3)
P 		779.6
(-2.5)
P 		877.5
(-1.7)
P 		780.7
(-2.5)
P 		709.5
(-3)
P 		779
B 1817.6
(3)
P 		1344.9
(0.4)
P 		867.5
(-2.2)
P 		730.3
(-3)
P 		1278.7
(0)
P 		1161.3
(-0.6)
P 		1087
C 1925.5
(3)
P 		1165.2
(-0.6)
P 		938.4
(-1.6)
P 		645.3
(-3)
P 		1007.1
(-1.3)
P 		970.8
(-1.5)
P 		1280
avr 1579.3
(3) 		1332.9
(1.2) 		861.8
(-2.2) 		751
(-3) 		1022.2
(-1) 		947.2
(-1.6) 		828
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172363_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16701
Sequence Type Exemplar sequence
Representative Public ID F53A9.6 NCBI
Target Description F53A9.6 /REP_DB=WormBase Gene ID /WP=CE02766 /TR=Q20691 /GB=AAC46561.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077074 NCBI Caenorhabditis elegans F53A9.6 (F53A9.6) mRNA, complete cds. 11/11 None
SNAP00000001076 ENSEMBL cdna:SNAP chromosome:CEL140:X:8713482:8713742:-1 11/11 None
GENEFINDER00000001086 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8713482:8713742:-1 11/11 None
F53A9.6 ENSEMBL cdna:known chromosome:CEL140:X:8713482:8713742:-1 gene:F53A9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077075 2/11 Cross Hyb Matching Probes A 
SNAP00000001077 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001082 2/11 Cross Hyb Matching Probes None
F53A9.7 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8713480-8713741(-) 85.44 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A9.6
Entrez Gene 186145 Entrez gene
SwissProt Q20691 EMBL-EBI
WormBase CE02766 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172363_X_AT
gaggatacaacgctccatacggaggacacggaggatatgctccaccaccagtccacggag
ctccaggatacatgccaccaactgttcatgtccacactgacggaggacaccacggacata
tggacacccatcaccaccatgacagccaccatcatggaggacaccatggaggacatcacg
gaggacactacgaaagccattatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATACAACGCTCCATACGGAGG 277 403 32 Antisense
GGACACGGAGGATATGCTCCACCAC 319 525 55 Antisense
AGTCCACGGAGCTCCAGGATACATG 580 59 81 Antisense
AGGATACATGCCACCAACTGTTCAT 576 55 96 Antisense
AACTGTTCATGTCCACACTGACGGA 437 143 111 Antisense
GACGGAGGACACCACGGACATATGG 385 377 130 Antisense
CACCACGGACATATGGACACCCATC 611 201 139 Antisense
TGACAGCCACCATCATGGAGGACAC 671 569 171 Antisense
GGAGGACACCATGGAGGACATCACG 23 517 187 Antisense
GGACATCACGGAGGACACTACGAAA 525 525 202 Antisense
AGGACACTACGAAAGCCATTATGAA 32 55 213 Antisense
Sequence Source Affymetrix Proprietary Database