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[172362_x_at]

Description B0350.3 /REP_DB=WormBase Gene ID /WP=CE06706 /TR=Q17485 /GB=AAA93442.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3.2
(-2.5)
A 		1.9
(-2.8)
A 		1
(-3)
A 		26.6
(3)
A 		26
B 19.8
(0.8)
A 		7.5
(-1.9)
A 		2.3
(-3)
A 		29.9
(3)
A 		28
C 1.3
(-3)
A 		4.6
(-2.5)
A 		2
(-2.9)
A 		43.2
(3)
A 		42
avr 8.1
(-1.8) 		4.7
(-2.4) 		1.8
(-3) 		33.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.7
(-2.6)
A 		1.8
(-2.6)
A 		11.3
(3)
A 		1.1
(-3)
A 		2.4
(-2.2)
A 		1.7
(-2.6)
A 		10
B 1.8
(-0.8)
A 		2.7
(1.5)
A 		2
(-0.3)
A 		3.3
(3)
A 		0.9
(-3)
A 		1.5
(-1.5)
A 		2
C 0.8
(-3)
A 		7.9
(-0.7)
A 		19.6
(3)
A 		3
(-2.3)
A 		2
(-2.6)
A 		0.8
(-3)
A 		19
avr 1.4
(-2.9) 		4.1
(-1.3) 		11
(3) 		2.5
(-2.3) 		1.8
(-2.7) 		1.3
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(-1.5)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3.9
(3)
A 		4
B 6.3
(2.9)
A 		1.8
(-1.7)
A 		0.5
(-3)
A 		6.4
(3)
A 		6
C 0.4
(-3)
A 		1.3
(-2.2)
A 		0.7
(-2.7)
A 		7.3
(3)
A 		7
avr 2.6
(-0.7) 		1.2
(-2.2) 		0.5
(-3) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.6
(-2.2)
A 		2.5
(3)
A 		0.3
(-3)
A 		0.7
(-1.9)
A 		0.4
(-2.7)
A 		2
B 0.6
(-0.6)
A 		0.9
(3)
A 		0.5
(-1.8)
A 		0.9
(3)
A 		0.4
(-3)
A 		0.6
(-0.6)
A 		1
C 0.3
(-3)
A 		2.4
(-0.3)
A 		5
(3)
A 		0.6
(-2.6)
A 		0.7
(-2.5)
A 		0.3
(-3)
A 		5
avr 0.4
(-3) 		1.3
(-0.7) 		2.7
(3) 		0.6
(-2.5) 		0.6
(-2.5) 		0.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172362_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10867
Sequence Type Exemplar sequence
Representative Public ID B0350.3 NCBI
Target Description B0350.3 /REP_DB=WormBase Gene ID /WP=CE06706 /TR=Q17485 /GB=AAA93442.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068496 NCBI Caenorhabditis elegans B0350.3 (B0350.3) mRNA, complete cds. 11/11 None
B0350.3 ENSEMBL cdna:known chromosome:CEL140:IV:5965466:5966025:1 gene:B0350.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5965471-5966031(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0350.3
Entrez Gene 181938 Entrez gene
SwissProt Q17485 EMBL-EBI
WormBase CE06706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93442 Hypothetical protein B0350.3 [Caenorhabditis elegans] ref|NP_500897.1| B0350.3 [Caenorhabditis elegans] 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:172362_X_AT
atgctgctcaacttacagaaaattttgaaaaaatgggttatttgcacactgccaaaacca
aacgttacgtttcttgccattaaattttttaatcttaaaaatgagtttttgtttttttct
aaattctgcaaaaaacaacctaaatttgaaattttgaatgtttcatattgttctcaaaat
ttccaaaaatatcgtattcaatacttgaactactttaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTGCTCAACTTACAGAAAATTT 674 41 13 Antisense
AAAATGGGTTATTTGCACACTGCCA 236 133 42 Antisense
AATGGGTTATTTGCACACTGCCAAA 589 161 44 Antisense
GGTTATTTGCACACTGCCAAAACCA 634 505 48 Antisense
TGCACACTGCCAAAACCAAACGTTA 384 577 55 Antisense
CACACTGCCAAAACCAAACGTTACG 456 195 57 Antisense
TCTAAATTCTGCAAAAAACAACCTA 54 601 130 Antisense
TTTTGAATGTTTCATATTGTTCTCA 397 677 164 Antisense
TTCATATTGTTCTCAAAATTTCCAA 86 689 174 Antisense
TATCGTATTCAATACTTGAACTACT 156 657 202 Antisense
TCAATACTTGAACTACTTTAAAATT 665 577 210 Antisense
Sequence Source Affymetrix Proprietary Database