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[172361_at]

Description B0547.2 /REP_DB=WormBase Gene ID /WP=CE07771 /TR=P91000 /GB=AAB37994.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 41
(-3)
A 		46.7
(-2.4)
A 		64.6
(-0.3)
A 		94.1
(3)
A 		53
B 64.5
(3)
A 		61.2
(2.5)
A 		27.8
(-3)
A 		43.4
(-0.4)
A 		37
C 32.6
(-2.5)
A 		64.4
(-1.6)
A 		15.5
(-3)
A 		230.9
(3)
P 		215
avr 46
(-2.3) 		57.4
(-1.5) 		36
(-3) 		122.8
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 61.8
(1.4)
A 		42.6
(-1.6)
A 		72.4
(3)
A 		71.9
(2.9)
A 		56.6
(0.6)
A 		33.4
(-3)
A 		39
B 39
(-1.2)
A 		60.6
(1.2)
A 		76.7
(3)
A 		22.8
(-3)
A 		48.6
(-0.1)
A 		36.8
(-1.4)
A 		54
C 11.4
(-3)
A 		42.7
(1.4)
A 		24.8
(-1.1)
A 		54.1
(3)
A 		25.4
(-1)
A 		21.8
(-1.5)
M 		43
avr 37.4
(-1.5) 		48.6
(0.9) 		58
(3) 		49.6
(1.2) 		43.5
(-0.2) 		30.7
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 14.9
(1.2)
A 		10.1
(-3)
A 		16.9
(3)
A 		13.8
(0.3)
A 		7
B 20.6
(3)
A 		15.1
(0.7)
A 		6.5
(-3)
A 		9.2
(-1.9)
A 		14
C 10.8
(-2)
A 		18.5
(-0.7)
A 		5.4
(-3)
A 		38.9
(3)
P 		34
avr 15.4
(0.2) 		14.6
(-0.3) 		9.6
(-3) 		20.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.4
(-1)
A 		15.2
(1.2)
A 		15.8
(1.6)
A 		18.2
(3)
A 		17.1
(2.3)
A 		8.1
(-3)
A 		10
B 13.6
(0.2)
A 		20.2
(3)
A 		18.6
(2.3)
A 		6
(-3)
A 		19.7
(2.8)
A 		13.7
(0.3)
A 		14
C 4.2
(-3)
A 		13
(3)
A 		6.3
(-1.6)
A 		10.9
(1.6)
A 		8.2
(-0.3)
A 		7.3
(-0.9)
M 		9
avr 9.7
(-3) 		16.1
(3) 		13.6
(0.7) 		11.7
(-1.1) 		15
(2) 		9.7
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172361_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10384
Sequence Type Exemplar sequence
Representative Public ID B0547.2 NCBI
Target Description B0547.2 /REP_DB=WormBase Gene ID /WP=CE07771 /TR=P91000 /GB=AAB37994.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068439 NCBI Caenorhabditis elegans B0547.2 (B0547.2) mRNA, complete cds. 11/11 None
B0547.2 ENSEMBL cdna:known chromosome:CEL140:IV:5645816:5646218:1 gene:B0547.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5645821-5646224(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0547.2
Entrez Gene 182032 Entrez gene
SwissProt P91000 EMBL-EBI
WormBase CE07771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37994 Hypothetical protein B0547.2 [Caenorhabditis elegans] ref|NP_500840.1| B0547.2 [Caenorhabditis elegans] 8.0E-30
Sequence
Target Sequence 
>C. ELEGANS:172361_AT
gaaaatattctgtattcgtcccagcacttttctacacccgacgcttgtggattcaatgta
gaagatcaaataaaactccacttcgtctatggactggtcgtaaatagtactcttcgtgag
aaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATATTCTGTATTCGTCCCAGC 563 353 43 Antisense
CACCCGACGCTTGTGGATTCAATGT 194 201 77 Antisense
GACGCTTGTGGATTCAATGTAGAAG 597 379 82 Antisense
GATCAAATAAAACTCCACTTCGTCT 142 421 106 Antisense
CAAATAAAACTCCACTTCGTCTATG 445 191 109 Antisense
AAAACTCCACTTCGTCTATGGACTG 448 131 114 Antisense
ACTCCACTTCGTCTATGGACTGGTC 154 97 117 Antisense
CCACTTCGTCTATGGACTGGTCGTA 616 269 120 Antisense
GGACTGGTCGTAAATAGTACTCTTC 90 523 133 Antisense
GGTCGTAAATAGTACTCTTCGTGAG 147 497 138 Antisense
AAATAGTACTCTTCGTGAGAAAATT 356 115 144 Antisense
Sequence Source Affymetrix Proprietary Database