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[172360_x_at]

Description C03A7.4 /REP_DB=WormBase Gene ID /WP=CE07862 /TR=O16500 /GB=AAB66001.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 58      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8692
1 2 3 4 range
A 141.7
(-3)
M 		8761.9
(3)
P 		8590.9
(2.9)
P 		93.1
(-3)
P 		8669
B 70.3
(-3)
A 		7738.1
(3)
P 		7780.9
(3)
P 		109.6
(-3)
A 		7711
C 117.7
(-3)
A 		7315.2
(2.9)
P 		7384.4
(3)
P 		106
(-3)
P 		7278
avr 109.9
(-3) 		7938.4
(3) 		7918.7
(3) 		102.9
(-3) 		7836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3586
1 2 3 4 5 6 range
A 1701.1
(-3)
P 		5109.4
(3)
P 		1928.6
(-2.6)
P 		2791.6
(-1.1)
P 		4284.1
(1.5)
P 		4160
(1.3)
P 		3408
B 1523.9
(-3)
P 		3805
(3)
P 		2098.3
(-1.5)
P 		2721.9
(0.2)
P 		3361.4
(1.8)
P 		3199.1
(1.4)
P 		2281
C 1614.9
(-3)
P 		4408.6
(2.8)
P 		2706.7
(-0.7)
P 		2120.7
(-2)
P 		4510.7
(3)
P 		2755.1
(-0.6)
P 		2896
avr 1613.3
(-3) 		4441
(3) 		2244.5
(-1.7) 		2544.7
(-1) 		4052.1
(2.2) 		3371.4
(0.7) 		2828
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2560
1 2 3 4 range
A 51.6
(-2.9)
M 		1902
(2.1)
P 		2245.8
(3)
P 		13.6
(-3)
P 		2232
B 22.4
(-3)
A 		1911.1
(3)
P 		1803
(2.7)
P 		23.4
(-3)
A 		1889
C 39
(-3)
A 		2103.2
(1.9)
P 		2573.7
(3)
P 		17.9
(-3)
P 		2556
avr 37.7
(-2.9) 		1972.1
(2.4) 		2207.5
(3) 		18.3
(-3) 		2189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1504
1 2 3 4 5 6 range
A 313.6
(-3)
P 		1817.1
(3)
P 		420
(-2.6)
P 		708
(-1.4)
P 		1292.8
(0.9)
P 		1012.8
(-0.2)
P 		1504
B 530.2
(-2.9)
P 		1266.5
(2.3)
P 		509.5
(-3)
P 		720.9
(-1.5)
P 		1365.7
(3)
P 		1192.9
(1.8)
P 		856
C 598.6
(-2)
P 		1345.2
(2.3)
P 		688.9
(-1.5)
P 		426.5
(-3)
P 		1459.6
(3)
P 		922.3
(-0.1)
P 		1033
avr 480.8
(-3) 		1476.3
(3) 		539.5
(-2.6) 		618.5
(-2.2) 		1372.7
(2.4) 		1042.7
(0.4) 		996
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172360_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15949
Sequence Type Exemplar sequence
Representative Public ID C03A7.4 NCBI
Target Description C03A7.4 /REP_DB=WormBase Gene ID /WP=CE07862 /TR=O16500 /GB=AAB66001.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071981 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-5) (pqn-5) mRNA, complete cds. 11/11 None
SNAP00000035278 ENSEMBL cdna:SNAP chromosome:CEL140:V:5158436:5159649:1 11/11 None
GENEFINDER00000035298 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5158436:5159649:1 11/11 None
C03A7.4 ENSEMBL cdna:known chromosome:CEL140:V:5158436:5159710:1 gene:C03A7.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071982 7/11 Cross Hyb Matching Probes A 
NM_071992 6/11 Cross Hyb Matching Probes A 
NM_071983 5/11 Cross Hyb Matching Probes A 
NM_071022 1/11 Cross Hyb Matching Probes A 
SNAP00000025913 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025923 1/11 Cross Hyb Matching Probes None
SNAP00000035279 7/11 Cross Hyb Matching Probes None
SNAP00000035280 5/11 Cross Hyb Matching Probes None
SNAP00000035293 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035294 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035296 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035297 5/11 Cross Hyb Matching Probes None
R09B5.5 1/11 Cross Hyb Matching Probes A 
C03A7.7 7/11 Cross Hyb Matching Probes A 
C03A7.8 5/11 Cross Hyb Matching Probes A 
C03A7.14 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5158435-5159649(+) 100.0 100.0
chrV:5160490-5161705(-) 98.29 98.29
chrV:5163207-5164571(-) 97.51 97.51
chrV:5192950-5194271(-) 90.23 91.69
Public Domain and Genome References
Gene Title
Gene Symbol pqn-5
Ensembl C03A7.4
Entrez Gene 182136 Entrez gene
SwissProt O16500 EMBL-EBI
WormBase CE07862 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66001 Prion-like-(q/n-rich)-domain-bearing protein protein 5 [Caenorhabditis elegans] ref|NP_504382.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-5) [Caenorhabditis elegans] 4.0E-23
blast AAB65996 Activated in blocked unfolded protein response protein 6 [Caenorhabditis elegans] ref|NP_504383.1| Activated in Blocked Unfolded protein response family member (abu-6) [Caenorhabditis elegans] 2.0E-22
blast AAB65995 Activated in blocked unfolded protein response protein 7 [Caenorhabditis elegans] ref|NP_504384.1| Activated in Blocked Unfolded protein response family member (abu-7) [Caenorhabditis elegans] 6.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 1.6E-35
Sequence
Target Sequence 
>C. ELEGANS:172360_X_AT
tcaagctcaatgccaaccacagtgccagcaacaatgccaatcttcatgtgtccagcaaca
gcaacaatccaaccagtgcgagccagcttgcaacactcaatgctctgatatctgccaaca
aactgctcaggctacccaacaagtctacaaccagaacatgaaccagaacaccaacactca
aatgtacaacccatacaataccaacaccaaccagaacgctaactgcgctccagcttgcca
accagcctgcgacaactcctgcacttcccagcagactcagccaatgtaccaaccatacga
caccaccactgaagctccagctcaagtcatccagattgttctccagacttctgttgctca
atcatcccaatgtgccccacaatgcgaacaatcctgccaacagcaatgtgttcagcaaca
acagccagctgcccagtgccaaactgcctgccaatcatcatgctctaactcatgccaagc
tgctcaaccagcaactactgcctgccagcagagcccacaacagagctcctgctcttgcca
agctaactactctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCTCAATGCCAACCACAGTGC 553 631 591 Antisense
CAATGCCAATCTTCATGTGTCCAGC 534 181 622 Antisense
GCCAGCTTGCAACACTCAATGCTCT 490 279 672 Antisense
AATGCTCTGATATCTGCCAACAAAC 6 167 689 Antisense
TCAGGCTACCCAACAAGTCTACAAC 399 621 717 Antisense
TCATCCAGATTGTTCTCCAGACTTC 700 621 917 Antisense
TCCAGACTTCTGTTGCTCAATCATC 41 591 932 Antisense
CAATGCGAACAATCCTGCCAACAGC 696 181 970 Antisense
CTGCCAATCATCATGCTCTAACTCA 222 237 1038 Antisense
TCTAACTCATGCCAAGCTGCTCAAC 23 615 1054 Antisense
TGCTCTTGCCAAGCTAACTACTCTC 559 579 1120 Antisense
Sequence Source Affymetrix Proprietary Database