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[172359_x_at]

Description ZK993.3 /REP_DB=WormBase Gene ID /WP=CE24756 /TR=Q9N4L3 /GB=AAF40016.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 38.1
(-0.4)
A 		21.5
(-3)
A 		35.2
(-0.8)
A 		59.1
(3)
P 		38
B 16.4
(-1.2)
A 		47.9
(3)
A 		2.6
(-3)
A 		45.6
(2.7)
P 		45
C 11.2
(-3)
A 		14.6
(-2.6)
A 		21.8
(-1.7)
A 		60.4
(3)
P 		49
avr 21.9
(-2.7) 		28
(-1.6) 		19.9
(-3) 		55
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 4.5
(-1.9)
A 		0.6
(-3)
A 		18.5
(2.1)
A 		2.2
(-2.5)
A 		2.1
(-2.6)
A 		21.7
(3)
A 		21
B 12.4
(1.3)
A 		11.4
(0.9)
A 		10.9
(0.7)
A 		3.3
(-2.2)
A 		17
(3)
A 		1.2
(-3)
A 		16
C 21.1
(-0.1)
A 		41.2
(3)
A 		7.4
(-2.2)
A 		8.3
(-2.1)
A 		5
(-2.6)
A 		2.5
(-3)
A 		39
avr 12.7
(0.7) 		17.7
(3) 		12.3
(0.5) 		4.6
(-3) 		8
(-1.4) 		8.5
(-1.2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.9
(3)
A 		4.7
(-3)
A 		9.2
(-0.1)
A 		8.6
(-0.5)
P 		9
B 5.2
(-0.5)
A 		11.8
(3)
A 		0.6
(-3)
A 		9.7
(1.9)
P 		11
C 3.7
(-3)
A 		4.2
(-2.5)
A 		7.6
(0.6)
A 		10.2
(3)
P 		7
avr 7.6
(-0.1) 		6.9
(-1.2) 		5.8
(-3) 		9.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-2.3)
A 		0.2
(-3)
A 		4
(1.5)
A 		0.6
(-2.5)
A 		0.6
(-2.5)
A 		5.3
(3)
A 		5
B 4.3
(0.6)
A 		3.8
(0.1)
A 		2.6
(-1)
A 		0.9
(-2.5)
A 		6.9
(3)
A 		0.4
(-3)
A 		7
C 7.8
(0.6)
A 		12.6
(3)
A 		1.9
(-2.4)
A 		1.7
(-2.5)
A 		1.6
(-2.6)
A 		0.8
(-3)
A 		12
avr 4.3
(1.4) 		5.5
(3) 		2.8
(-0.7) 		1.1
(-3) 		3
(-0.4) 		2.2
(-1.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172359_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12
Sequence Type Exemplar sequence
Representative Public ID ZK993.3 NCBI
Target Description ZK993.3 /REP_DB=WormBase Gene ID /WP=CE24756 /TR=Q9N4L3 /GB=AAF40016.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058421 NCBI Caenorhabditis elegans ZK993.3 (ZK993.3) mRNA, complete cds. 11/11 None
ZK993.3 ENSEMBL cdna:known chromosome:CEL140:I:1128087:1128786:-1 gene:ZK993.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1128693-1128790(-) 53.89 53.89
Public Domain and Genome References
Gene Title
Ensembl ZK993.3
Entrez Gene 191482 Entrez gene
SwissProt Q9N4L3 EMBL-EBI
WormBase CE36775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF40016 Hypothetical protein ZK993.3 [Caenorhabditis elegans] ref|NP_490822.2| ZK993.3 [Caenorhabditis elegans] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172359_X_AT
cggtgtacttctctcggacaagtagtgcaaaattttgtttagaattttgtataaaaaatc
ttgaattttcattattatttatggcattttccgttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTGTACTTCTCTCGGACAAGTAG 290 243 65 Antisense
GGTGTACTTCTCTCGGACAAGTAGT 623 497 66 Antisense
GTGTACTTCTCTCGGACAAGTAGTG 587 485 67 Antisense
GTACTTCTCTCGGACAAGTAGTGCA 438 459 69 Antisense
ACTTCTCTCGGACAAGTAGTGCAAA 96 103 71 Antisense
TTCTCTCGGACAAGTAGTGCAAAAT 692 689 73 Antisense
CTCTCGGACAAGTAGTGCAAAATTT 390 229 75 Antisense
CTCGGACAAGTAGTGCAAAATTTTG 98 233 77 Antisense
AAATCTTGAATTTTCATTATTATTT 335 117 120 Antisense
CATTATTATTTATGGCATTTTCCGT 526 213 134 Antisense
TATTATTTATGGCATTTTCCGTTAA 396 663 137 Antisense
Sequence Source Affymetrix Proprietary Database