[Home] | [Total List]

[172356_at]

Description K02E11.7 /REP_DB=WormBase Gene ID /WP=CE17999 /TR=O62297 /GB=CAB01224.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 46.6
(-3)
A 		141.1
(3)
A 		86
(-0.5)
A 		104.4
(0.7)
A 		95
B 27.2
(-3)
A 		78.5
(0.3)
A 		57
(-1.1)
A 		121.5
(3)
A 		94
C 58.1
(-3)
A 		105.6
(-0.2)
A 		112.1
(0.2)
A 		159.1
(3)
A 		101
avr 44
(-3) 		108.4
(1.6) 		85
(-0.1) 		128.3
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 11.8
(-3)
A 		33
(-0.9)
A 		73
(3)
A 		43
(0.1)
A 		35.4
(-0.7)
A 		30.3
(-1.2)
A 		61
B 23.9
(-1.6)
A 		63
(1.4)
A 		83.5
(3)
A 		5.6
(-3)
A 		33.6
(-0.8)
A 		18.9
(-2)
A 		78
C 6.5
(-2.8)
A 		54.4
(0.4)
A 		93
(3)
A 		79.1
(2.1)
A 		3.1
(-3)
A 		12.3
(-2.4)
A 		90
avr 14.1
(-3) 		50.1
(0.1) 		83.2
(3) 		42.6
(-0.5) 		24
(-2.1) 		20.5
(-2.4) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 17
(-2.3)
A 		30.6
(3)
A 		22.5
(-0.2)
A 		15.3
(-3)
A 		15
B 8.7
(-3)
A 		19.4
(0.7)
A 		13.2
(-1.4)
A 		25.9
(3)
A 		17
C 19.2
(-3)
A 		30.3
(0.3)
A 		39.1
(3)
A 		26.8
(-0.7)
A 		20
avr 15
(-3) 		26.8
(3) 		24.9
(2) 		22.7
(0.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.2
(-3)
A 		11.7
(1.2)
A 		15.9
(3)
A 		10.9
(0.8)
A 		10.7
(0.7)
A 		7.4
(-0.7)
A 		14
B 8.3
(-0.9)
A 		21
(3)
A 		20.3
(2.8)
A 		1.5
(-3)
A 		13.7
(0.8)
A 		7.1
(-1.3)
A 		20
C 2.4
(-2.6)
A 		16.6
(1.1)
A 		23.7
(3)
A 		15.9
(0.9)
A 		1
(-3)
A 		4.1
(-2.2)
A 		23
avr 4.3
(-3) 		16.4
(1.6) 		20
(3) 		9.4
(-1.1) 		8.5
(-1.4) 		6.2
(-2.3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172356_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14345
Sequence Type Exemplar sequence
Representative Public ID K02E11.7 NCBI
Target Description K02E11.7 /REP_DB=WormBase Gene ID /WP=CE17999 /TR=O62297 /GB=CAB01224.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074126
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074126 NCBI Caenorhabditis elegans K02E11.7 (K02E11.7) mRNA, complete cds. None
K02E11.7 ENSEMBL cdna:known chromosome:CEL140:V:14256076:14256908:-1 gene:K02E11.7 None
SNAP00000039265 ENSEMBL cdna:SNAP chromosome:CEL140:V:14256110:14256869:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14256109-14256720(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02E11.7
Entrez Gene 186898 Entrez gene
SwissProt O62297 EMBL-EBI
WormBase CE37981 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01224 Hypothetical protein K02E11.7 [Caenorhabditis elegans] ref|NP_506527.2| K02E11.7 [Caenorhabditis elegans] 2.0E-74
blast CAE60984 Hypothetical protein CBG04719 [Caenorhabditis briggsae] 9.0E-47
blast CAE73092 Hypothetical protein CBG20471 [Caenorhabditis briggsae] 8.0E-30
Sequence
Target Sequence 
>C. ELEGANS:172356_AT
gaaggtaagttcaattttatccgagttcaatgacaacgtcaccatccccatgccaatttc
aagcaactatagaagaatagtcgagccaacctatggagtaaaagaagagcaattgtacag
agtatgcaatggcaaaaataagaaaacttgtggctactgggaaaacattcaaacaaaagc
aaaggttgtggctggaaaaacgacgtacaataaaaacaaaaaagcgttgattatcaaaca
aatcttgaaaacagattttggaatgtattacactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTAAGTTCAATTTTATCCGAG 656 331 15 Antisense
GTTCAATTTTATCCGAGTTCAATGA 506 445 23 Antisense
AGTTCAATGACAACGTCACCATCCC 671 63 38 Antisense
CCATCCCCATGCCAATTTCAAGCAA 552 271 56 Antisense
CCCCATGCCAATTTCAAGCAACTAT 414 261 60 Antisense
TATAGAAGAATAGTCGAGCCAACCT 198 653 82 Antisense
TAGTCGAGCCAACCTATGGAGTAAA 453 651 92 Antisense
TAAGAAAACTTGTGGCTACTGGGAA 88 637 153 Antisense
GTGGCTACTGGGAAAACATTCAAAC 689 491 164 Antisense
GTTGTGGCTGGAAAAACGACGTACA 503 433 199 Antisense
CAGATTTTGGAATGTATTACACTGG 430 195 266 Antisense
Sequence Source Affymetrix Proprietary Database