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[172354_x_at]

Description ZK757.3C /REP_DB=WormBase Gene ID /WP=CE24738 /TR=Q9U3G0 /GB=CAB54245.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 26      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.5
(-3)
A 		2.3
(-1.9)
A 		2.5
(-1.6)
A 		5.7
(3)
A 		4
B 1.8
(-3)
A 		3.8
(2.2)
A 		2.8
(-0.4)
A 		4.1
(3)
A 		2
C 4.5
(3)
A 		4.4
(2.7)
A 		2.6
(-3)
A 		3.2
(-1.1)
A 		2
avr 2.6
(-3) 		3.5
(0.2) 		2.6
(-3) 		4.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.5
(-2.7)
A 		2.2
(-3)
A 		2.2
(-3)
A 		3.7
(-1.6)
A 		8.8
(3)
A 		3.6
(-1.7)
A 		7
B 2
(-3)
A 		3
(-2.7)
A 		21
(3)
A 		2.7
(-2.8)
A 		3.3
(-2.6)
A 		2.5
(-2.8)
A 		19
C 4.2
(-0.7)
A 		3.4
(-2)
A 		6.5
(3)
A 		2.8
(-3)
A 		6.3
(2.7)
A 		3.4
(-2)
A 		4
avr 2.9
(-3) 		2.9
(-3) 		9.9
(3) 		3.1
(-2.8) 		6.1
(-0.3) 		3.2
(-2.7) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.5
(-3)
A 		0.5
(-3)
A 		0.7
(1)
A 		0.8
(3)
A 		0
B 0.6
(-3)
A 		0.9
(3)
A 		0.7
(-1)
A 		0.9
(3)
A 		0
C 1.5
(3)
A 		1.3
(1.8)
A 		0.9
(-0.6)
A 		0.5
(-3)
A 		1
avr 0.9
(3) 		0.9
(3) 		0.8
(0) 		0.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-2.2)
A 		0.5
(-3)
A 		0.9
(-1.9)
A 		2.7
(3)
A 		0.9
(-1.9)
A 		2
B 0.7
(-3)
A 		1
(-2.6)
A 		5.1
(3)
A 		0.7
(-3)
A 		1.4
(-2)
A 		0.9
(-2.7)
A 		4
C 1.6
(1.3)
A 		1
(-1.3)
A 		1.6
(1.3)
A 		0.6
(-3)
A 		2
(3)
A 		1.1
(-0.9)
A 		1
avr 0.9
(-2.3) 		0.9
(-2.3) 		2.4
(3) 		0.7
(-3) 		2
(1.6) 		1
(-1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172354_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6444
Sequence Type Exemplar sequence
Representative Public ID ZK757.3C NCBI
Target Description ZK757.3C /REP_DB=WormBase Gene ID /WP=CE24738 /TR=Q9U3G0 /GB=CAB54245.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066792(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066792 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-76) (tag-76) mRNA, complete cds. 11/11 None
ZK757.3c ENSEMBL cdna:known chromosome:CEL140:III:9890621:9891314:-1 gene:ZK757.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069817 1/11 Cross Hyb Matching Probes A B 
NM_069816 1/11 Cross Hyb Matching Probes A B 
NM_066791 3/11 Cross Hyb Matching Probes A B 
NM_066790 3/11 Cross Hyb Matching Probes A B 
SNAP00000010923 3/11 Cross Hyb Matching Probes None
ZK757.3b 3/11 Cross Hyb Matching Probes A B 
ZK757.3a.2 3/11 Cross Hyb Matching Probes A B 
ZK757.3a.1 3/11 Cross Hyb Matching Probes A B 
T22B3.2a 1/11 Cross Hyb Matching Probes A B 
T22B3.2b 1/11 Cross Hyb Matching Probes A B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176400 3 1 NM_066790 187385_s_at (11)
NM_066791 187385_s_at (11)
NM_066792 172354_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9891005-9891219(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK757.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54245 Hypothetical protein ZK757.3c [Caenorhabditis elegans] ref|NP_499193.1| Temporarily Assigned Gene name family member (tag-76) [Caenorhabditis elegans] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172354_X_AT
aagaaggaatgcgacaagttttgtggataacaacacgctgactagttcagaagggctcac
ctccggcgtcttctcatgggcgcttgaacgcttgcctacctgcctacgagaagagctcca
gcttcctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGGAATGCGACAAGTTTTGTG 421 151 18 Antisense
GTTTTGTGGATAACAACACGCTGAC 125 449 35 Antisense
GGATAACAACACGCTGACTAGTTCA 686 509 42 Antisense
GACTAGTTCAGAAGGGCTCACCTCC 191 373 57 Antisense
GTCTTCTCATGGGCGCTTGAACGCT 358 467 85 Antisense
TCTCATGGGCGCTTGAACGCTTGCC 253 609 89 Antisense
TCATGGGCGCTTGAACGCTTGCCTA 229 623 91 Antisense
TTGCCTACCTGCCTACGAGAAGAGC 91 701 109 Antisense
GCCTACCTGCCTACGAGAAGAGCTC 418 281 111 Antisense
ACCTGCCTACGAGAAGAGCTCCAGC 694 87 115 Antisense
TACGAGAAGAGCTCCAGCTTCCTCT 379 647 122 Antisense
Sequence Source Affymetrix Proprietary Database