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[172353_x_at]

Description C02E7.6 /REP_DB=WormBase Gene ID /WP=CE07843 /TR=O16428 /GB=AAC24165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 25      6grp_total > 10      4grp_total > 57      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16025
1 2 3 4 range
A 128.6
(-3)
A 		16153.9
(3)
P 		13478.5
(2)
P 		453.1
(-2.9)
A 		16025
B 165.1
(-3)
A 		16096.4
(3)
P 		15227.5
(2.7)
P 		315.1
(-2.9)
M 		15931
C 136.4
(-3)
A 		14846.2
(3)
P 		12176.6
(1.9)
P 		391.5
(-2.9)
M 		14710
avr 143.4
(-3) 		15698.8
(3) 		13627.5
(2.2) 		386.6
(-2.9) 		15555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10466
1 2 3 4 5 6 range
A 1251.2
(-3)
P 		11300.2
(3)
P 		5665.9
(-0.4)
P 		4440.1
(-1.1)
P 		3352.4
(-1.7)
P 		2889.3
(-2)
P 		10049
B 834.7
(-3)
P 		10923.3
(3)
P 		6507.3
(0.4)
P 		4265.1
(-1)
P 		3695.8
(-1.3)
P 		3280.1
(-1.5)
P 		10089
C 977.4
(-3)
P 		10734.2
(3)
P 		5153.7
(-0.4)
P 		3733.4
(-1.3)
P 		3782.9
(-1.3)
P 		3234.4
(-1.6)
P 		9757
avr 1021.1
(-3) 		10985.9
(3) 		5775.6
(-0.1) 		4146.2
(-1.1) 		3610.4
(-1.4) 		3134.6
(-1.7) 		9965
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4223
1 2 3 4 range
A 46.8
(-3)
A 		3506.6
(3)
P 		3523.5
(3)
P 		66.3
(-3)
A 		3477
B 52.6
(-3)
A 		3975.4
(3)
P 		3528.6
(2.3)
P 		67.2
(-3)
M 		3923
C 45.1
(-3)
A 		4268.4
(3)
P 		4243.9
(3)
P 		66
(-3)
M 		4223
avr 48.2
(-3) 		3916.8
(3) 		3765.3
(2.8) 		66.5
(-3) 		3869

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3788
1 2 3 4 5 6 range
A 230.6
(-3)
P 		4018.9
(3)
P 		1233.9
(-1.4)
P 		1126.1
(-1.6)
P 		1011.6
(-1.8)
P 		703.5
(-2.3)
P 		3788
B 290.4
(-3)
P 		3635.9
(3)
P 		1580.2
(-0.7)
P 		1129.7
(-1.5)
P 		1501.6
(-0.8)
P 		1223.1
(-1.3)
P 		3346
C 362.3
(-3)
P 		3275.3
(3)
P 		1311.7
(-1)
P 		750.8
(-2.2)
P 		1224.1
(-1.2)
P 		1082.7
(-1.5)
P 		2913
avr 294.4
(-3) 		3643.4
(3) 		1375.3
(-1.1) 		1002.2
(-1.7) 		1245.8
(-1.3) 		1003.1
(-1.7) 		3349
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172353_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15131
Sequence Type Exemplar sequence
Representative Public ID C02E7.6 NCBI
Target Description C02E7.6 /REP_DB=WormBase Gene ID /WP=CE07843 /TR=O16428 /GB=AAC24165.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071919 NCBI Caenorhabditis elegans C02E7.6 (C02E7.6) mRNA, complete cds. 11/11 None
SNAP00000015182 ENSEMBL cdna:SNAP chromosome:CEL140:V:4919056:4919324:1 11/11 None
GENEFINDER00000015196 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4919056:4919324:1 11/11 None
C02E7.6.1 ENSEMBL cdna:known chromosome:CEL140:V:4919039:4919471:1 gene:C02E7.6 11/11 None
C02E7.6.2 ENSEMBL cdna:known chromosome:CEL140:V:4919039:4919583:1 gene:C02E7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073745 3/11 Cross Hyb Matching Probes A 
NM_001027854 1/11 Cross Hyb Matching Probes None
NM_067766 1/11 Cross Hyb Matching Probes A 
SNAP00000011222 1/11 Cross Hyb Matching Probes None
GENEFINDER00000011235 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034544 1/11 Cross Hyb Matching Probes None
SNAP00000035820 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035824 3/11 Cross Hyb Matching Probes None
ZK643.8 1/11 Cross Hyb Matching Probes A B 
C23H5.9 1/11 Cross Hyb Matching Probes A 
E02A10.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4919055-4919324(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02E7.6
Entrez Gene 178885 Entrez gene
SwissProt O16428 EMBL-EBI
WormBase CE07843 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172353_X_AT
cttgttcccatccggaggaggtggaggatgcggatgtgccccaccaccaccaccagcatg
tggatgcggaggaggagctgctccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTTCCCATCCGGAGGAGGTGGA 422 217 63 Antisense
GTTCCCATCCGGAGGAGGTGGAGGA 254 439 66 Antisense
GGAGGAGGTGGAGGATGCGGATGTG 106 517 76 Antisense
GAGGTGGAGGATGCGGATGTGCCCC 149 403 80 Antisense
GGTGGAGGATGCGGATGTGCCCCAC 157 499 82 Antisense
CACCACCACCACCAGCATGTGGATG 180 203 104 Antisense
CCACCACCACCAGCATGTGGATGCG 358 273 106 Antisense
ACCACCACCAGCATGTGGATGCGGA 15 87 108 Antisense
ACCACCAGCATGTGGATGCGGAGGA 15 85 111 Antisense
GATGCGGAGGAGGAGCTGCTCCACC 699 413 125 Antisense
TGCGGAGGAGGAGCTGCTCCACCAC 424 583 127 Antisense
Sequence Source Affymetrix Proprietary Database