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[172352_at]

Description C33A12.4 /REP_DB=WormBase Gene ID /WP=CE05350 /TR=Q18358 /GB=CAA92788.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 21      6grp_total > 25      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3033
1 2 3 4 range
A 1813.8
(-0.6)
P 		1044.6
(-2.1)
P 		632.8
(-3)
P 		3530
(3)
P 		2897
B 1633.7
(-1.3)
P 		976.6
(-2.7)
P 		831.1
(-3)
P 		3665.6
(3)
P 		2835
C 1973
(-0.2)
P 		1225.9
(-1.9)
P 		767.7
(-3)
P 		3335.3
(3)
P 		2568
avr 1806.8
(-0.7) 		1082.4
(-2.3) 		743.9
(-3) 		3510.3
(3) 		2766

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1432
1 2 3 4 5 6 range
A 1653
(3)
P 		1135.1
(-0)
P 		1632.2
(2.9)
P 		870
(-1.6)
P 		622.2
(-3)
P 		692.9
(-2.6)
P 		1031
B 2003.7
(3)
P 		1809.2
(2.1)
P 		1323.2
(-0.2)
P 		808.5
(-2.6)
P 		730
(-3)
P 		1175.9
(-0.9)
P 		1274
C 1779.4
(2.5)
P 		1896.6
(3)
P 		571.6
(-3)
P 		894.8
(-1.5)
P 		782.7
(-2)
P 		1077.9
(-0.7)
P 		1325
avr 1812
(3) 		1613.6
(1.9) 		1175.7
(-0.5) 		857.8
(-2.2) 		711.6
(-3) 		982.2
(-1.5) 		1100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 660.4
(3)
P 		226.8
(-2.3)
P 		165.4
(-3)
P 		516.7
(1.3)
P 		495
B 521
(0.3)
P 		241.2
(-2.5)
P 		192.6
(-3)
P 		781.1
(3)
P 		589
C 653.1
(3)
P 		352.4
(-1.7)
P 		267.6
(-3)
P 		562.4
(1.6)
P 		386
avr 611.5
(2.9) 		273.5
(-2.1) 		208.5
(-3) 		620.1
(3) 		412

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 304.7
(0.5)
P 		403.7
(3)
P 		355.5
(1.8)
P 		220.7
(-1.7)
P 		187.8
(-2.5)
P 		168.7
(-3)
P 		235
B 697.2
(3)
P 		602.2
(1.8)
P 		321.3
(-1.7)
P 		214.1
(-3)
P 		296.6
(-2)
P 		438.5
(-0.2)
P 		483
C 659.5
(3)
P 		578.7
(2.1)
P 		145.5
(-3)
P 		179.9
(-2.6)
P 		253.3
(-1.7)
P 		360.8
(-0.5)
P 		514
avr 553.8
(3) 		528.2
(2.6) 		274.1
(-1.8) 		204.9
(-3) 		245.9
(-2.3) 		322.7
(-1) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8624
Sequence Type Exemplar sequence
Representative Public ID C33A12.4 NCBI
Target Description C33A12.4 /REP_DB=WormBase Gene ID /WP=CE05350 /TR=Q18358 /GB=CAA92788.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069284 NCBI Caenorhabditis elegans C33A12.4 (C33A12.4) mRNA, complete cds. 11/11 None
SNAP00000009028 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9510262:9510524:-1 11/11 None
GENEFINDER00000009038 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9510262:9510524:-1 11/11 None
C33A12.4 ENSEMBL cdna:known chromosome:CEL140:IV:9509730:9510571:-1 gene:C33A12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9510267-9510530(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33A12.4
Entrez Gene 177784 Entrez gene
SwissProt Q18358 EMBL-EBI
WormBase CE05350 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92788 Hypothetical protein C33A12.4 [Caenorhabditis elegans] ref|NP_501685.1| C33A12.4 [Caenorhabditis elegans] 1.0E-30
blast CAE72765 Hypothetical protein CBG20015 [Caenorhabditis briggsae] 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172352_AT
gaagacaaagaagttcctgatgtagaggttgactacagcaagtacgatgaggatagtgtt
ccaattccggaaaaggatatcgaggaatctcatccaggccgcccggatttggactatgat
gagactccagttggaccagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACAAAGAAGTTCCTGATGTAG 554 339 25 Antisense
GAAGTTCCTGATGTAGAGGTTGACT 546 337 34 Antisense
GAGGTTGACTACAGCAAGTACGATG 501 403 49 Antisense
GACTACAGCAAGTACGATGAGGATA 539 373 55 Antisense
GATGAGGATAGTGTTCCAATTCCGG 190 409 70 Antisense
GATAGTGTTCCAATTCCGGAAAAGG 384 423 76 Antisense
GATATCGAGGAATCTCATCCAGGCC 94 427 100 Antisense
TATCGAGGAATCTCATCCAGGCCGC 296 657 102 Antisense
GCCGCCCGGATTTGGACTATGATGA 513 285 122 Antisense
CCGGATTTGGACTATGATGAGACTC 219 263 127 Antisense
GATGAGACTCCAGTTGGACCAGCTC 273 409 142 Antisense
Sequence Source Affymetrix Proprietary Database