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[172351_x_at]

Description T02H6.3 /REP_DB=WormBase Gene ID /WP=CE21139 /TR=Q9N5E5 /GB=AAF39963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 44      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 33      6grp_total > 10      4grp_total > 03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14659
1 2 3 4 range
A 2266.6
(-2.4)
P 		986
(-2.9)
P 		852.9
(-3)
P 		15115
(3)
P 		14262
B 3328.4
(-0.5)
P 		1034.7
(-3)
P 		1022.6
(-3)
P 		6474.4
(3)
P 		5452
C 2767.2
(-2)
P 		689
(-2.9)
P 		455.9
(-3)
P 		14796.4
(3)
P 		14341
avr 2787.4
(-1.9) 		903.2
(-2.9) 		777.1
(-3) 		12128.6
(3) 		11352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5319
1 2 3 4 5 6 range
A 1735
(-1.7)
P 		1105.3
(-2.4)
P 		5583
(3)
P 		644.1
(-3)
P 		2141.6
(-1.2)
P 		1502.5
(-2)
P 		4939
B 1803
(1.4)
P 		2059
(3)
P 		1674.2
(0.7)
P 		1300.8
(-1.6)
P 		1073.8
(-3)
P 		1823.6
(1.6)
P 		985
C 612
(-2.6)
P 		5618.1
(3)
P 		810.2
(-2.4)
P 		1465.3
(-1.7)
P 		299.5
(-3)
P 		1925.8
(-1.2)
P 		5319
avr 1383.3
(-2.2) 		2927.5
(3) 		2689.1
(2.2) 		1136.7
(-3) 		1171.6
(-2.9) 		1750.6
(-0.9) 		1791
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2336
1 2 3 4 range
A 825.3
(-1.2)
P 		214
(-3)
P 		223
(-3)
P 		2212.5
(3)
P 		1999
B 1061.4
(1.3)
P 		255.5
(-2.9)
P 		237
(-3)
P 		1379.7
(3)
P 		1143
C 916
(-1.1)
P 		198.1
(-2.9)
P 		158.9
(-3)
P 		2494.9
(3)
P 		2336
avr 934.2
(-0.6) 		222.5
(-2.9) 		206.3
(-3) 		2029
(3) 		1823

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1617
1 2 3 4 5 6 range
A 319.8
(-2.1)
P 		393.1
(-1.7)
P 		1215.9
(3)
P 		163.4
(-3)
P 		646.2
(-0.2)
P 		365.8
(-1.8)
P 		1053
B 627.4
(2)
P 		685.4
(3)
P 		406.6
(-1.9)
P 		344.5
(-3)
P 		436.3
(-1.4)
P 		680
(2.9)
P 		341
C 226.8
(-2.5)
P 		1714.3
(3)
P 		206.2
(-2.6)
P 		294.7
(-2.3)
P 		96.9
(-3)
P 		644.7
(-1)
P 		1617
avr 391.3
(-1.9) 		930.9
(3) 		609.6
(0.1) 		267.5
(-3) 		393.1
(-1.9) 		563.5
(-0.3) 		663
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172351_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5021
Sequence Type Exemplar sequence
Representative Public ID T02H6.3 NCBI
Target Description T02H6.3 /REP_DB=WormBase Gene ID /WP=CE21139 /TR=Q9N5E5 /GB=AAF39963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061393 NCBI Caenorhabditis elegans T02H6.3 (T02H6.3) mRNA, complete cds. 11/11 None
T02H6.3 ENSEMBL cdna:known chromosome:CEL140:II:691887:697866:1 gene:T02H6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 3/11 Cross Hyb Matching Probes A 
NM_077120 1/11 Cross Hyb Matching Probes A 
NM_073039 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 8/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024789 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 2/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 2/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 4/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 2/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 2/11 Cross Hyb Matching Probes None
Y116A8C.41 3/11 Cross Hyb Matching Probes A 
Y54B9A.1 2/11 Cross Hyb Matching Probes A 
C24A3.1 1/11 Cross Hyb Matching Probes A 
SNAP00000003365 11/11 Negative Strand Matching Probes None
GENEFINDER00000003374 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl T02H6.3
Entrez Gene 188003 Entrez gene
SwissProt Q9N5E5 EMBL-EBI
WormBase CE21139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39963 Hypothetical protein T02H6.3 [Caenorhabditis elegans] ref|NP_493794.1| T02H6.3 [Caenorhabditis elegans] 0.0
blast CAB55158 Hypothetical protein Y116A8C.41 [Caenorhabditis elegans] ref|NP_503041.1| Y116A8C.41 [Caenorhabditis elegans] 9.0E-79
blast CAE58680 Hypothetical protein CBG01854 [Caenorhabditis briggsae] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.5E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.5E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.9E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.7E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.4E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.7E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 9.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.0E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.2E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.3E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.5E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.9E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.7E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.7E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.7E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.1E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.5E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.5E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 4.2E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.4E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.9E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.9E-10
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.4E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.9E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.2E-6
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.4E-9
Sequence
Target Sequence 
>C. ELEGANS:172351_X_AT
tggtgagacccttcgtggtgagacccatcttgacgagacccatcgtggtgagacccatcg
tgatgagacccatcgtggtgagacccatcgtggtgagacccatcgcggtgagacccatcg
tggtgagacccatcgtggtgagacccaccgtggtgagacccatcgtggtgagacccatcg
tgacgagacccatcgtgacgatacctttcgtggtgagacccttcgtggtgagacccttcg
tgacgagacccatcgtggtgagacccatcgtgacgatacctttcgtggtgagacccatcg
tgatgagacccatcgtggtgagacccttcgtggtgagacccatcgtgacgagacccatcg
tgatgagacccatcgtgacgatacccatcgtggtgagacccttcgtggtgagacccatct
tgacgagacccatcgtggtgagacccatcgtgatgagacccaccgtggtgagacccatct
tgacgagacccatcgtggtgagacccatcgtgatgagacccatcgtggtgagacccatcg
tgatgagacccatcgtggtgagacccatcgtggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGAGACCCTTCGTGGTGAGACC 537 551 3315 Antisense
CCATCGTGGTGAGACCCATCGTGGT 127 271 3384 Antisense
TTCGTGGTGAGACCCTTCGTGACGA 264 695 3536 Antisense
CCATCGTGGTGAGACCCATCGTGAC 117 271 3564 Antisense
GATACCTTTCGTGGTGAGACCCATC 172 425 3589 Antisense
ATGAGACCCATCGTGGTGAGACCCT 597 43 3617 Antisense
CTTCGTGGTGAGACCCATCGTGACG 205 221 3640 Antisense
CTTCGTGGTGAGACCCATCTTGACG 204 221 3715 Antisense
ATGAGACCCACCGTGGTGAGACCCA 595 43 3767 Antisense
GAGACCCATCGTGATGAGACCCATC 180 395 3814 Antisense
CATCGTGGTGAGACCCATCGTGGTG 104 213 3865 Antisense
Sequence Source Affymetrix Proprietary Database