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[172350_x_at]

Description T22D1.2 /REP_DB=WormBase Gene ID /WP=CE17246 /TR=Q9GZH1 /GB=AAF98625.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 53.8
(0.1)
A 		24.1
(-3)
A 		74.5
(2.2)
A 		82.2
(3)
A 		58
B 43.1
(3)
A 		8
(-3)
A 		12.4
(-2.2)
A 		10.1
(-2.6)
A 		35
C 61.9
(3)
A 		29.1
(-1)
A 		13.1
(-3)
A 		27.9
(-1.2)
A 		49
avr 52.9
(3) 		20.4
(-3) 		33.3
(-0.6) 		40.1
(0.6) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.4
(-2.1)
A 		14.9
(-2)
A 		39.4
(2.6)
A 		9.6
(-3)
A 		41.5
(3)
A 		12.6
(-2.4)
A 		32
B 4.4
(-3)
A 		5.4
(-2.3)
A 		12.2
(2.9)
A 		11.1
(2)
A 		12.4
(3)
A 		9.5
(0.8)
A 		8
C 16.2
(-1.7)
A 		29.1
(0.2)
A 		14.6
(-1.9)
A 		47.4
(3)
A 		32.5
(0.8)
A 		7.5
(-3)
A 		40
avr 11.7
(-2.4) 		16.5
(-0.9) 		22.1
(0.9) 		22.7
(1.1) 		28.8
(3) 		9.9
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 19.6
(3)
A 		5.2
(-3)
A 		19.5
(3)
A 		12
(-0.2)
A 		14
B 13.8
(3)
A 		2
(-3)
A 		2.9
(-2.5)
A 		2.2
(-2.9)
A 		12
C 20.5
(3)
A 		8.4
(-1.6)
A 		4.6
(-3)
A 		4.7
(-3)
A 		16
avr 18
(3) 		5.2
(-3) 		9
(-1.2) 		6.3
(-2.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.7
(-2.8)
A 		5.3
(-1.3)
A 		8.6
(0.7)
A 		2.4
(-3)
A 		12.5
(3)
A 		3.1
(-2.6)
A 		10
B 1.5
(-3)
A 		1.8
(-2.5)
A 		3
(-0.4)
A 		2.9
(-0.6)
A 		5
(3)
A 		3.6
(0.6)
A 		4
C 6
(-0.4)
A 		8.9
(1.8)
A 		3.7
(-2.1)
A 		9.5
(2.3)
A 		10.5
(3)
A 		2.5
(-3)
A 		8
avr 3.4
(-2.7) 		5.3
(-0.9) 		5.1
(-1.1) 		4.9
(-1.3) 		9.3
(3) 		3.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172350_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8887
Sequence Type Exemplar sequence
Representative Public ID T22D1.2 NCBI
Target Description T22D1.2 /REP_DB=WormBase Gene ID /WP=CE17246 /TR=Q9GZH1 /GB=AAF98625.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068667 NCBI Caenorhabditis elegans T22D1.2 (T22D1.2) mRNA, complete cds. 11/11 None
SNAP00000024015 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6921839:6922836:1 11/11 None
GENEFINDER00000024029 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6921839:6922836:1 11/11 None
T22D1.2 ENSEMBL cdna:known chromosome:CEL140:IV:6921839:6922836:1 gene:T22D1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6921844-6922842(+) 100.0 100.0
chrIV:6921927-6922550(+) 66.89 66.89
chrIV:6922205-6922759(+) 59.19 59.19
chrIV:6922298-6922826(+) 56.88 56.88
Public Domain and Genome References
Gene Title
Ensembl T22D1.2
Entrez Gene 188739 Entrez gene
SwissProt Q9GZH1 EMBL-EBI
WormBase CE17246 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245968_AT proline-rich extensin-like family protein at
HG-U133_PLUS_2:206998_X_AT proline-rich protein BstNI subfamily 4 hs
HG-U133A:206998_X_AT proline-rich protein BstNI subfamily 4 hs
HG-FOCUS:206998_X_AT proline-rich protein BstNI subfamily 4 hs
HG-U133A_2:206998_X_AT proline-rich protein BstNI subfamily 4 hs
HU35KSUBA:K03207_F_AT proline-rich protein BstNI subfamily 4 hs
HUGENEFL:K03207_F_AT proline-rich protein BstNI subfamily 4 hs
U133_X3P:HS.259445.0.A1_3P_AT proline-rich protein BstNI subfamily 4 hs
U133_X3P:HS.103972.1.S1_3P_X_AT proline-rich protein BstNI subfamily 4 hs
U133_X3P:HS.103972.1.S1_3P_AT proline-rich protein BstNI subfamily 4 hs
U133_X3P:216881_3P_X_AT proline-rich protein BstNI subfamily 4 hs
HG-U133A_2:216881_X_AT proline-rich protein BstNI subfamily 4 hs
HG-FOCUS:216881_X_AT proline-rich protein BstNI subfamily 4 hs
HG-U133_PLUS_2:216881_X_AT proline-rich protein BstNI subfamily 4 hs
HG-U133A:216881_X_AT proline-rich protein BstNI subfamily 4 hs
HG-U133_PLUS_2:243389_AT proline-rich protein BstNI subfamily 4 hs
HG-U133B:243389_AT proline-rich protein BstNI subfamily 4 hs
HG-U95AV2:32457_F_AT proline-rich protein BstNI subfamily 4 hs
HG-U95AV2:32458_F_AT proline-rich protein BstNI subfamily 4 hs
Protein Similarities
Method ID Description E-Value
blast AAF98625 Hypothetical protein T22D1.2 [Caenorhabditis elegans] ref|NP_501068.1| T22D1.2 [Caenorhabditis elegans] 4.0E-29
blast AAF98625 Hypothetical protein T22D1.2 [Caenorhabditis elegans] ref|NP_501068.1| T22D1.2 [Caenorhabditis elegans] 5.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172350_X_AT
ccaccaccaactggagaaccacaggatctttctggagaaggtaatgcttctcgtcgtcca
ccaccaccaccgaagggaactggaagcccaccaccaccaccaactggagaaccacaggat
ctttctggagaaggtaatgcttctcgtcgtccaccaccaccaccgaagggaactggaagc
ccaccaccaccaccaactggagaaccacaggatctttctacagaaggtaatgcttctcgt
cgtccaccaccgccaccgaagggaactggaaccccaccaccaccaccaactggagaacca
caggatctttctgcagaaggttatgcttctcgtcgtccaccaccaccaccgaagggaact
ggaagcccaacaccaccaccaactggagaaccacaggatctttctggagaaggtaatgct
tctcgtcgtccaccaccaccaccgaagggaactggaagcccaccaccaccaccaactgga
gaaccacaggatctttctggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACCAACTGGAGAACCACAGG 686 273 334 Antisense
CACCACCACCGAAGGGAACTGGAAG 538 201 395 Antisense
GGAGAACCACAGGATCTTTCTGGAG 628 519 439 Antisense
AGAAGGTAATGCTTCTCGTCGTCCA 343 73 462 Antisense
GGAGAACCACAGGATCTTTCTACAG 627 519 532 Antisense
ACAGAAGGTAATGCTTCTCGTCGTC 78 93 553 Antisense
GGAGAACCACAGGATCTTTCTGCAG 626 519 625 Antisense
GCAGAAGGTTATGCTTCTCGTCGTC 307 311 646 Antisense
GAAGGGAACTGGAAGCCCAACACCA 475 331 684 Antisense
GAGAACCACAGGATCTTTCTGGAGA 474 389 719 Antisense
AGAACCACAGGATCTTTCTGGAGAA 703 73 813 Antisense
Sequence Source Affymetrix Proprietary Database