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[172349_x_at]

Description T04B8.4 /REP_DB=WormBase Gene ID /WP=CE18192 /TR=O44845 /GB=AAB95010.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 26.9
(-2.2)
A 		12.4
(-3)
A 		57.6
(-0.6)
A 		124.4
(3)
A 		112
B 39.3
(-3)
A 		46.4
(-2.4)
A 		73.6
(-0.2)
A 		111.6
(3)
A 		72
C 18
(-2.8)
A 		32.4
(-2.3)
A 		11.5
(-3)
A 		197.1
(3)
A 		186
avr 28.1
(-3) 		30.4
(-2.9) 		47.6
(-2) 		144.4
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 13.6
(-2)
A 		30.6
(0.5)
A 		14.4
(-1.8)
A 		6.4
(-3)
A 		47.9
(3)
A 		7.8
(-2.8)
A 		42
B 31
(-1.1)
A 		26
(-1.6)
A 		17.5
(-2.3)
A 		76.7
(3)
A 		50.1
(0.6)
A 		10.3
(-3)
A 		66
C 8.3
(-3)
A 		80.3
(3)
A 		23.7
(-1.7)
A 		16.6
(-2.3)
A 		45.4
(0.1)
A 		11.1
(-2.8)
A 		72
avr 17.6
(-1.8) 		45.6
(2.7) 		18.5
(-1.6) 		33.2
(0.7) 		47.8
(3) 		9.7
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 9.8
(-0.3)
A 		2.7
(-3)
A 		15.1
(1.8)
A 		18.2
(3)
A 		16
B 12.5
(-2.5)
A 		11.5
(-3)
A 		17.1
(-0.3)
A 		23.8
(3)
A 		12
C 5.9
(-2.6)
A 		9.3
(-1.9)
A 		4
(-3)
A 		33.2
(3)
A 		29
avr 9.4
(-2.4) 		7.8
(-3) 		12.1
(-1.5) 		25.1
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.5
(-2.6)
A 		10.9
(1.4)
A 		3.1
(-2.3)
A 		1.6
(-3)
A 		14.4
(3)
A 		1.9
(-2.9)
A 		13
B 10.8
(-0.5)
A 		8.6
(-1.3)
A 		4.2
(-2.9)
A 		20.3
(3)
A 		20.4
(3)
A 		3.8
(-3)
A 		17
C 3.1
(-3)
A 		24.5
(3)
A 		6
(-2.2)
A 		3.3
(-2.9)
A 		14.7
(0.3)
A 		3.7
(-2.8)
A 		21
avr 5.5
(-1.9) 		14.7
(2.2) 		4.4
(-2.4) 		8.4
(-0.6) 		16.5
(3) 		3.1
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172349_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5983
Sequence Type Exemplar sequence
Representative Public ID T04B8.4 NCBI
Target Description T04B8.4 /REP_DB=WormBase Gene ID /WP=CE18192 /TR=O44845 /GB=AAB95010.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061371(11), NM_061370(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061371 NCBI Caenorhabditis elegans T04B8.4 (T04B8.4) mRNA, complete cds. 11/11 None
NM_061370 NCBI Caenorhabditis elegans W04H10.4 (W04H10.4) mRNA, complete cds. 9/11 A 
W04H10.4 ENSEMBL cdna:known chromosome:CEL140:II:609775:611071:-1 gene:W04H10.4 9/11 A 
T04B8.4 ENSEMBL cdna:known chromosome:CEL140:II:612416:612812:-1 gene:T04B8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064127 2/11 Cross Hyb Matching Probes A 
SNAP00000015254 3/11 Cross Hyb Matching Probes None
GENEFINDER00000015256 3/11 Cross Hyb Matching Probes None
GENEFINDER00000038213 2/11 Cross Hyb Matching Probes None
T27D12.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:612415-612812(-) 100.0 100.0
chrII:610706-611071(-) 97.48 97.48
chrII:11832072-11832468(-) 95.6 95.6
Public Domain and Genome References
Gene Title

Ensembl W04H10.4
T04B8.4
Entrez Gene 188053 Entrez gene
189207 Entrez gene
SwissProt O44853 EMBL-EBI
WormBase CE18192 Wormbase
CE14606 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 1.0E-138
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 6.0E-66
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 4.0E-38
blast NP_493772 T04B8.4 [Caenorhabditis elegans] 2.0E-25
blast CAA93877 Hypothetical protein T27D12.3 [Caenorhabditis elegans] ref|NP_496528.1| T27D12.3 [Caenorhabditis elegans] 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:172349_X_AT
ttattcccgtagtcacttcttgtattccaactcaacaaattgaaatgccgtgcccaacag
actgggaaaagtttgaacgccccagcgggccatggtgtgtcaaggtgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTCCCGTAGTCACTTCTTGTAT 302 679 29 Antisense
CCGTAGTCACTTCTTGTATTCCAAC 606 263 35 Antisense
GTCACTTCTTGTATTCCAACTCAAC 348 465 40 Antisense
CTTCTTGTATTCCAACTCAACAAAT 582 221 44 Antisense
TCAACAAATTGAAATGCCGTGCCCA 132 631 60 Antisense
AAATTGAAATGCCGTGCCCAACAGA 158 115 65 Antisense
AATGCCGTGCCCAACAGACTGGGAA 89 167 72 Antisense
GCCGTGCCCAACAGACTGGGAAAAG 106 283 75 Antisense
TGGGAAAAGTTTGAACGCCCCAGCG 563 399 91 Antisense
CAGCGGGCCATGGTGTGTCAAGGTG 400 203 111 Antisense
GGGCCATGGTGTGTCAAGGTGAGGA 98 493 115 Antisense
Sequence Source Affymetrix Proprietary Database