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[172348_x_at]

Description F40G12.7 /REP_DB=WormBase Gene ID /WP=CE10188 /TR=Q20248 /GB=CAB01185.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 17.1
(-1.6)
A 		37.8
(0.8)
A 		5
(-3)
A 		56.6
(3)
A 		52
B 42.1
(2.7)
A 		3
(-3)
A 		22.7
(-0.1)
A 		44.1
(3)
A 		41
C 3.4
(-3)
A 		8
(-2.3)
A 		9.5
(-2.1)
A 		45.2
(3)
A 		42
avr 20.9
(-1.6) 		16.3
(-2.4) 		12.4
(-3) 		48.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 14
(-2.4)
A 		30.1
(-0.1)
A 		51.8
(3)
A 		33.6
(0.4)
A 		9.9
(-3)
A 		33.9
(0.4)
A 		42
B 2.5
(-3)
A 		16
(-0.1)
A 		20.2
(0.9)
A 		30
(3)
A 		25.8
(2.1)
A 		17.3
(0.2)
A 		28
C 20.6
(-1.4)
A 		41.3
(3)
A 		15.3
(-2.5)
A 		18.6
(-1.8)
A 		19
(-1.7)
A 		13
(-3)
A 		28
avr 12.4
(-3) 		29.1
(3) 		29.1
(3) 		27.4
(2.4) 		18.2
(-0.9) 		21.4
(0.2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.2
(1.2)
A 		8.2
(2.9)
A 		1.3
(-3)
A 		8.3
(3)
A 		7
B 13.4
(3)
A 		0.7
(-3)
A 		5.3
(-0.8)
A 		9.4
(1.1)
A 		13
C 1.1
(-3)
A 		2.3
(-1.9)
A 		3.3
(-1)
A 		7.6
(3)
A 		7
avr 6.9
(1.2) 		3.7
(-2.5) 		3.3
(-3) 		8.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.6
(-3)
A 		10.7
(2.6)
A 		11.3
(3)
A 		8.5
(1.1)
A 		3
(-2.7)
A 		8.2
(0.9)
A 		9
B 0.9
(-3)
A 		5.3
(-0.3)
A 		4.9
(-0.5)
A 		8
(1.4)
A 		10.5
(3)
A 		6.5
(0.5)
A 		10
C 7.6
(-0.4)
A 		12.6
(3)
A 		3.9
(-2.9)
A 		3.7
(-3)
A 		6.2
(-1.3)
A 		4.4
(-2.5)
A 		9
avr 3.7
(-3) 		9.5
(3) 		6.7
(0.1) 		6.7
(0.1) 		6.6
(-0) 		6.4
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172348_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12845
Sequence Type Exemplar sequence
Representative Public ID F40G12.7 NCBI
Target Description F40G12.7 /REP_DB=WormBase Gene ID /WP=CE10188 /TR=Q20248 /GB=CAB01185.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074133 NCBI Caenorhabditis elegans F40G12.7 (F40G12.7) mRNA, complete cds. 11/11 None
SNAP00000026732 ENSEMBL cdna:SNAP chromosome:CEL140:V:14278257:14279076:1 11/11 None
GENEFINDER00000026751 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14278275:14285585:1 10/11 None
F40G12.7 ENSEMBL cdna:known chromosome:CEL140:V:14278257:14278931:1 gene:F40G12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071835 2/11 Cross Hyb Matching Probes A 
NM_065310 2/11 Cross Hyb Matching Probes A 
NM_060617 2/11 Cross Hyb Matching Probes A 
SNAP00000036889 3/11 Cross Hyb Matching Probes None
GENEFINDER00000036898 2/11 Cross Hyb Matching Probes None
SNAP00000028569 2/11 Cross Hyb Matching Probes None
GENEFINDER00000028579 1/11 Cross Hyb Matching Probes None
SNAP00000010091 2/11 Cross Hyb Matching Probes None
Y47H9C.9 2/11 Cross Hyb Matching Probes A 
C34C12.1 2/11 Cross Hyb Matching Probes A 
Y61A9LA.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14278256-14278931(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G12.7
Entrez Gene 185567 Entrez gene
SwissProt Q20248 EMBL-EBI
WormBase CE10188 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01185 Hypothetical protein F40G12.7 [Caenorhabditis elegans] ref|NP_506534.1| F40G12.7 [Caenorhabditis elegans] 1.0E-104
blast CAB01185 Hypothetical protein F40G12.7 [Caenorhabditis elegans] ref|NP_506534.1| F40G12.7 [Caenorhabditis elegans] 1.0E-102
blast CAB01185 Hypothetical protein F40G12.7 [Caenorhabditis elegans] ref|NP_506534.1| F40G12.7 [Caenorhabditis elegans] 8.0E-98
blast AAR12983 Hypothetical protein Y61A9LA.12 [Caenorhabditis elegans] 8.0E-62
blast NP_504236 Y61A9LA.5 [Caenorhabditis elegans] 8.0E-62
blast AAR12983 Hypothetical protein Y61A9LA.12 [Caenorhabditis elegans] 1.0E-61
blast NP_504236 Y61A9LA.5 [Caenorhabditis elegans] 1.0E-61
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 3.59999990463257
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 4.3E-27
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 4.3E-27
Pfam IPR007026 EMBL-EBI CC domain 4.9E-14
Pfam IPR007026 EMBL-EBI CC domain 1.5E-15
Sequence
Target Sequence 
>C. ELEGANS:172348_X_AT
tctacgccgcttaggatgacgacgccgcttggtgtatccttatcatccgacctgaaacgt
gccttgcaagacaatgaaaagctgacaagggacgtgagcgatgcaaaacttttgaaagaa
gatgctgaaataaaactgaaaaaaattaggaataagcttaatggagagcactctgaaaag
ttgggaaagttgaatgataagtacaaggctgtacaagaagaactgaaaacgatgaaacag
agttggacgcagttgaaacgggagaaaggagttttggaaactgaaaaccgtcgtttggaa
actgcaaaaagtgaattagatcggcaacttttaggaaaaaatgatgaattacgaatggca
gatgtggaaggcagaggtgttctcaaaagctctcttgagaaacagctatgtgaggagctg
aaaaagaacaacgaagatatgatgtacgtgtgcaatttgctgatcgtttccgaagatgct
catttccacagagttcaaaattgctgcattgtcactttggctttctatcatgcccacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACGCCGCTTAGGATGACGACGC 524 611 16 Antisense
TTGGTGTATCCTTATCATCCGACCT 26 707 44 Antisense
CGACCTGAAACGTGCCTTGCAAGAC 530 251 63 Antisense
GATGTGGAAGGCAGAGGTGTTCTCA 704 407 376 Antisense
GAGGTGTTCTCAAAAGCTCTCTTGA 231 403 389 Antisense
GATATGATGTACGTGTGCAATTTGC 570 425 451 Antisense
GTGCAATTTGCTGATCGTTTCCGAA 544 481 465 Antisense
GTTTCCGAAGATGCTCATTTCCACA 345 451 481 Antisense
CAGAGTTCAAAATTGCTGCATTGTC 291 205 504 Antisense
TGCATTGTCACTTTGGCTTTCTATC 577 579 520 Antisense
TTTGGCTTTCTATCATGCCCACGAT 627 665 531 Antisense
Sequence Source Affymetrix Proprietary Database