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[172347_at]

Description C36A4.10 /REP_DB=WormBase Gene ID /WP=CE03077 /TR=Q18497 /GB=CAA91276.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 6.8
(-2.8)
A 		20.7
(-2)
A 		3.3
(-3)
A 		105.2
(3)
A 		102
B 4.2
(-3)
A 		24.3
(-0.9)
A 		33.4
(0)
A 		62.5
(3)
P 		58
C 37.6
(-1.6)
A 		2.9
(-3)
A 		13.5
(-2.6)
A 		151.9
(3)
M 		149
avr 16.2
(-3) 		16
(-3) 		16.7
(-3) 		106.5
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 41.2
(-2.1)
A 		36.1
(-2.4)
A 		26.3
(-3)
A 		55
(-1.2)
A 		49.7
(-1.5)
A 		121.5
(3)
P 		95
B 63.2
(-1.3)
A 		71.5
(-1)
A 		60.8
(-1.4)
A 		64.1
(-1.3)
A 		17.8
(-3)
A 		177.7
(3)
P 		160
C 22.6
(-3)
A 		90.2
(0)
A 		55.3
(-1.5)
A 		74.6
(-0.7)
A 		31
(-2.6)
A 		156
(3)
P 		133
avr 42.3
(-2.5) 		65.9
(-1.3) 		47.5
(-2.3) 		64.6
(-1.4) 		32.8
(-3) 		151.7
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.5
(-2.3)
A 		4.5
(-1.5)
A 		0.9
(-3)
A 		15.4
(3)
A 		15
B 1.4
(-3)
A 		6
(-0.7)
A 		7.7
(0.2)
A 		13.3
(3)
P 		12
C 12.4
(-0.2)
A 		0.8
(-3)
A 		4.7
(-2.1)
A 		25.6
(3)
M 		25
avr 5.4
(-2.3) 		3.8
(-3) 		4.4
(-2.7) 		18.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 7.6
(-2.5)
A 		12.8
(-1.2)
A 		5.7
(-3)
A 		13.9
(-0.9)
A 		15
(-0.7)
A 		29.6
(3)
P 		24
B 22
(-1.5)
A 		23.8
(-1.3)
A 		14.8
(-2.2)
A 		17
(-2)
A 		7.2
(-3)
A 		66.3
(3)
P 		59
C 8.4
(-3)
A 		27.5
(-0.4)
A 		14.1
(-2.2)
A 		15
(-2.1)
A 		10
(-2.8)
A 		52.2
(3)
P 		44
avr 12.7
(-2.7) 		21.4
(-1.3) 		11.5
(-2.9) 		15.3
(-2.3) 		10.7
(-3) 		49.4
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172347_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7731
Sequence Type Exemplar sequence
Representative Public ID C36A4.10 NCBI
Target Description C36A4.10 /REP_DB=WormBase Gene ID /WP=CE03077 /TR=Q18497 /GB=CAA91276.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065373 NCBI Caenorhabditis elegans C36A4.10 (C36A4.10) mRNA, complete cds. 11/11 None
GENEFINDER00000028403 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3828647:3830743:-1 10/11 None
C36A4.10 ENSEMBL cdna:known chromosome:CEL140:III:3829858:3830213:-1 gene:C36A4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3829853-3830213(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36A4.10
Entrez Gene 175494 Entrez gene
SwissProt Q18497 EMBL-EBI
WormBase CE33979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91278 Hypothetical protein R13G10.4 [Caenorhabditis elegans] emb|CAA84672.1| Hypothetical protein R13G10.4 [Caenorhabditis elegans] ref|NP_497773.1| R13G10.4 [Caenorhabditis elegans] 2.0E-75
blast CAE63710 Hypothetical protein CBG08227 [Caenorhabditis briggsae] 8.0E-16
blast CAA91276 Hypothetical protein C36A4.10 [Caenorhabditis elegans] ref|NP_497774.2| C36A4.10 [Caenorhabditis elegans] 4.0E-15
blast CAA91276 Hypothetical protein C36A4.10 [Caenorhabditis elegans] ref|NP_497774.2| C36A4.10 [Caenorhabditis elegans] 7.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497774.2 1 10-27
C36A4.10 1 10-27
GENEFINDER00000028403 3 91-108,113-131,140-162
Sequence
Target Sequence 
>C. ELEGANS:172347_AT
atggtgtactgcgataccgactcgataatcttttatcggatttccatatattgcatatat
catatactgcgatacggattccagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGTACTGCGATACCGACTCGA 496 49 13 Antisense
GTGTACTGCGATACCGACTCGATAA 15 487 16 Antisense
GTACTGCGATACCGACTCGATAATC 377 459 18 Antisense
ACTGCGATACCGACTCGATAATCTT 201 97 20 Antisense
GCGATACCGACTCGATAATCTTTTA 413 289 23 Antisense
GATACCGACTCGATAATCTTTTATC 205 425 25 Antisense
GATAATCTTTTATCGGATTTCCATA 166 421 36 Antisense
TATCGGATTTCCATATATTGCATAT 578 657 46 Antisense
TATTGCATATATCATATACTGCGAT 659 663 61 Antisense
ATCATATACTGCGATACGGATTCCA 288 31 71 Antisense
TATACTGCGATACGGATTCCAGAAT 613 659 75 Antisense
Sequence Source Affymetrix Proprietary Database