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[172345_x_at]

Description B0034.2 /REP_DB=WormBase Gene ID /WP=CE02410 /TR=Q10903 /GB=AAK31384.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3.6
(-3)
A 		6.1
(-0.6)
A 		4.4
(-2.2)
A 		9.9
(3)
A 		6
B 3.7
(-1.8)
A 		3.4
(-3)
A 		3.4
(-3)
A 		4.9
(3)
A 		2
C 3.3
(-3)
A 		7.1
(0.8)
A 		9.3
(3)
A 		5.2
(-1.1)
A 		6
avr 3.5
(-3) 		5.5
(0.8) 		5.7
(1.1) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.2
(-1.2)
A 		4.1
(-1.3)
A 		2.2
(-3)
A 		3
(-2.3)
A 		8.9
(3)
A 		4.2
(-1.2)
A 		7
B 2.1
(-3)
A 		2.9
(-2.8)
A 		3.7
(-2.6)
A 		25.2
(3)
A 		3.5
(-2.6)
A 		8.2
(-1.4)
A 		23
C 7.7
(-1.5)
A 		5.7
(-2.1)
A 		23.5
(3)
A 		21.8
(2.5)
A 		21.4
(2.4)
A 		2.4
(-3)
A 		21
avr 4.7
(-2.8) 		4.2
(-3) 		9.8
(-0.3) 		16.7
(3) 		11.3
(0.4) 		4.9
(-2.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.3
(-1)
A 		1.3
(-1)
A 		1.2
(-3)
A 		1.5
(3)
A 		0
B 1.2
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
(0)
A 		0
C 1.1
(-2.5)
A 		2
(-0.3)
A 		3.3
(3)
A 		0.9
(-3)
A 		2
avr 1.2
(-2.1) 		1.4
(-0.4) 		1.8
(3) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-2.2)
A 		1.5
(-0.3)
A 		0.5
(-3)
A 		0.8
(-2.2)
A 		2.7
(3)
A 		1
(-1.6)
A 		2
B 0.7
(-3)
A 		1
(-2.7)
A 		0.9
(-2.8)
A 		6.7
(3)
A 		1.4
(-2.3)
A 		3.1
(-0.6)
A 		6
C 2.9
(-0.9)
A 		1.7
(-2.1)
A 		6
(2.1)
A 		4.4
(0.5)
A 		6.9
(3)
A 		0.8
(-3)
A 		6
avr 1.5
(-2.8) 		1.4
(-3) 		2.5
(-0.5) 		4
(3) 		3.7
(2.3) 		1.6
(-2.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172345_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5039
Sequence Type Exemplar sequence
Representative Public ID B0034.2 NCBI
Target Description B0034.2 /REP_DB=WormBase Gene ID /WP=CE02410 /TR=Q10903 /GB=AAK31384.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062787 NCBI Caenorhabditis elegans B0034.2 (B0034.2) mRNA, complete cds. 11/11 None
B0034.2 ENSEMBL cdna:known chromosome:CEL140:II:5944156:5944328:-1 gene:B0034.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5944152-5944325(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0034.2
Entrez Gene 181818 Entrez gene
SwissProt Q10903 EMBL-EBI
WormBase CE02410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31384 Hypothetical protein B0034.2 [Caenorhabditis elegans] ref|NP_495188.1| B0034.2 [Caenorhabditis elegans] 4.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172345_X_AT
ggatggatggattgatggggctgttgttggtggcgatcaaacaagaggaagagagaaaga
attgagagcggtgttccatcaaaggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGGATGGATTGATGGGGCTGTT 366 515 15 Antisense
GGATTGATGGGGCTGTTGTTGGTGG 522 507 23 Antisense
TGATGGGGCTGTTGTTGGTGGCGAT 472 567 27 Antisense
GGGCTGTTGTTGGTGGCGATCAAAC 489 493 32 Antisense
GGCTGTTGTTGGTGGCGATCAAACA 27 539 33 Antisense
TGTTGGTGGCGATCAAACAAGAGGA 321 555 39 Antisense
GGTGGCGATCAAACAAGAGGAAGAG 439 499 43 Antisense
AAGAATTGAGAGCGGTGTTCCATCA 531 151 71 Antisense
GAATTGAGAGCGGTGTTCCATCAAA 569 323 73 Antisense
TGAGAGCGGTGTTCCATCAAAGGTG 699 567 77 Antisense
GAGAGCGGTGTTCCATCAAAGGTGG 532 393 78 Antisense
Sequence Source Affymetrix Proprietary Database