[Home] | [Total List]

[172343_x_at]

Description B0213.6 /REP_DB=WormBase Gene ID /WP=CE16777 /TR=O44662 /GB=AAC47927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 10      6grp_total > 18      4grp_total > 51      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 875
1 2 3 4 range
A 583.3
(0.2)
P 		912.2
(3)
P 		638.3
(0.7)
P 		196.6
(-3)
P 		716
B 619
(0.1)
P 		988.2
(3)
P 		826
(1.7)
P 		227.5
(-3)
P 		761
C 548.4
(-0.5)
P 		1062.8
(3)
P 		802.8
(1.2)
P 		187.9
(-3)
P 		875
avr 583.6
(-0.1) 		987.7
(3) 		755.7
(1.2) 		204
(-3) 		784

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1419
1 2 3 4 5 6 range
A 1783.2
(3)
P 		1357.3
(-0.1)
P 		1271.2
(-0.7)
P 		1500.4
(0.9)
P 		956.1
(-3)
P 		1067
(-2.2)
P 		827
B 1693.8
(3)
P 		1219
(-1)
P 		1295.1
(-0.3)
P 		976.4
(-3)
P 		1290.8
(-0.4)
P 		1047.9
(-2.4)
P 		717
C 2375.4
(3)
P 		1196.9
(-2.4)
P 		1063.6
(-3)
P 		1178.5
(-2.5)
P 		1378
(-1.6)
P 		1226.1
(-2.3)
P 		1312
avr 1950.8
(3) 		1257.7
(-2) 		1210
(-2.3) 		1218.4
(-2.2) 		1208.3
(-2.3) 		1113.7
(-3) 		837
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 212.4
(3)
P 		198
(2.5)
P 		166.9
(1.5)
P 		28.8
(-3)
P 		184
B 197.4
(1.6)
P 		244.1
(3)
P 		191.4
(1.4)
P 		48.5
(-3)
P 		196
C 181.5
(0.3)
P 		305.6
(3)
P 		279.8
(2.4)
P 		31.7
(-3)
P 		274
avr 197.1
(1.5) 		249.2
(3) 		212.7
(2) 		36.3
(-3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 644
1 2 3 4 5 6 range
A 328.7
(-1.1)
P 		482.7
(3)
P 		276.8
(-2.5)
P 		380.5
(0.2)
P 		288.5
(-2.2)
P 		259.8
(-3)
P 		223
B 589.3
(3)
P 		405.8
(-0.3)
P 		314.5
(-2)
P 		258.6
(-3)
P 		524.4
(1.8)
P 		390.8
(-0.6)
P 		331
C 880.5
(3)
P 		365.2
(-1.8)
P 		270.7
(-2.7)
P 		237
(-3)
P 		445.9
(-1.1)
P 		410.4
(-1.4)
P 		644
avr 599.5
(3) 		417.9
(-0.5) 		287.3
(-3) 		292
(-2.9) 		419.6
(-0.5) 		353.7
(-1.7) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172343_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15503
Sequence Type Exemplar sequence
Representative Public ID B0213.6 NCBI
Target Description B0213.6 /REP_DB=WormBase Gene ID /WP=CE16777 /TR=O44662 /GB=AAC47927.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071706 NCBI Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-31) (nlp-31) mRNA, complete cds. 11/11 None
SNAP00000025859 ENSEMBL cdna:SNAP chromosome:CEL140:V:3979991:3980335:1 11/11 None
GENEFINDER00000025870 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3979991:3980335:1 11/11 None
B0213.6 ENSEMBL cdna:known chromosome:CEL140:V:3979953:3980435:1 gene:B0213.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065685 2/11 Cross Hyb Matching Probes A 
NM_182351 1/11 Cross Hyb Matching Probes None
NM_071709 1/11 Cross Hyb Matching Probes A 
SNAP00000022628 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022631 1/11 Cross Hyb Matching Probes None
SNAP00000020014 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020023 1/11 Cross Hyb Matching Probes None
SNAP00000025861 1/11 Cross Hyb Matching Probes None
SNAP00000025862 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025873 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025875 1/11 Cross Hyb Matching Probes None
F54D8.1.1 2/11 Cross Hyb Matching Probes A 
F54D8.1.3 2/11 Cross Hyb Matching Probes None
F54D8.1.2 2/11 Cross Hyb Matching Probes A 
F54D8.1.4 1/11 Cross Hyb Matching Probes None
B0213.3 1/11 Cross Hyb Matching Probes A 
F23H12.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3979990-3980335(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nlp-31
Ensembl B0213.6
Entrez Gene 178804 Entrez gene
SwissProt O44662 EMBL-EBI
WormBase CE16777 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504107.1 1 7-29
B0213.6 1 7-29
SNAP00000025859 1 7-29
GENEFINDER00000025870 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:172343_X_AT
atgatttcaacttcttcaattcttgttctcgtcgtccttctagcctgcttcatggctgcc
aatgctcaatggggatatggtggatatggaagaggttatggaggatatggtggatacggt
agaggctacggtggatatggtggatatggacgtgggtatggaggctatggacgtggaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTTCAACTTCTTCAATTCTTG 237 47 13 Antisense
AACTTCTTCAATTCTTGTTCTCGTC 515 139 21 Antisense
TTCTAGCCTGCTTCATGGCTGCCAA 485 691 50 Antisense
GCTTCATGGCTGCCAATGCTCAATG 292 305 59 Antisense
ATGGCTGCCAATGCTCAATGGGGAT 191 51 64 Antisense
CAATGCTCAATGGGGATATGGTGGA 224 181 72 Antisense
ATGGAGGATATGGTGGATACGGTAG 41 53 110 Antisense
GATACGGTAGAGGCTACGGTGGATA 295 423 125 Antisense
GAGGCTACGGTGGATATGGTGGATA 401 405 134 Antisense
GGATATGGACGTGGGTATGGAGGCT 393 509 154 Antisense
GTATGGAGGCTATGGACGTGGAATG 469 455 168 Antisense
Sequence Source Affymetrix Proprietary Database