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[172342_x_at]

Description C07D8.3 /REP_DB=WormBase Gene ID /WP=CE06773 /TR=P91023 /GB=AAB37973.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 7
(-3)
A 		21.6
(-1.5)
A 		11.1
(-2.6)
A 		64.7
(3)
A 		58
B 19.8
(-0.8)
A 		37
(3)
A 		27.7
(0.9)
A 		9.9
(-3)
A 		27
C 34.7
(-0.4)
A 		72.4
(3)
A 		5.7
(-3)
A 		25.3
(-1.2)
A 		67
avr 20.5
(-1.8) 		43.7
(3) 		14.8
(-3) 		33.3
(0.8) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 63.7
(3)
A 		31.1
(-0.5)
A 		29.4
(-0.7)
A 		8
(-3)
A 		28
(-0.8)
A 		28.9
(-0.7)
A 		56
B 21.1
(-0.6)
A 		35
(1.5)
A 		32
(1.1)
A 		44.4
(3)
A 		23.8
(-0.2)
A 		5.9
(-3)
A 		39
C 27.3
(1.5)
A 		13.5
(-1.5)
A 		7.9
(-2.7)
A 		15.7
(-1)
A 		34
(3)
A 		6.4
(-3)
A 		28
avr 37.4
(3) 		26.5
(0.2) 		23.1
(-0.6) 		22.7
(-0.7) 		28.6
(0.8) 		13.7
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.6
(-3)
A 		4.7
(-1.2)
A 		2.9
(-2.7)
A 		9.5
(3)
A 		7
B 6.3
(0.6)
A 		9.1
(3)
A 		6.4
(0.7)
A 		2.1
(-3)
A 		7
C 11.5
(0)
A 		20.8
(3)
A 		2
(-3)
A 		4.3
(-2.3)
A 		19
avr 6.8
(-0.7) 		11.5
(3) 		3.8
(-3) 		5.3
(-1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 11.7
(3)
A 		11.1
(2.6)
A 		6.4
(-0.3)
A 		2
(-3)
A 		8.4
(1)
A 		7
(0.1)
A 		10
B 7.3
(0.2)
A 		11.6
(2.9)
A 		7.8
(0.5)
A 		11.7
(3)
A 		9.7
(1.7)
A 		2.2
(-3)
A 		10
C 10.1
(2.4)
A 		4.1
(-1.6)
A 		2
(-3)
A 		3.2
(-2.2)
A 		11
(3)
A 		2.1
(-2.9)
A 		9
avr 9.7
(3) 		8.9
(2.2) 		5.4
(-1.4) 		5.6
(-1.2) 		9.7
(3) 		3.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172342_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16594
Sequence Type Exemplar sequence
Representative Public ID C07D8.3 NCBI
Target Description C07D8.3 /REP_DB=WormBase Gene ID /WP=CE06773 /TR=P91023 /GB=AAB37973.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076844 NCBI Caenorhabditis elegans C07D8.3 (C07D8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000029017 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7343992:7363123:1 11/11 None
SNAP00000029014 ENSEMBL cdna:SNAP chromosome:CEL140:X:7361614:7361994:1 11/11 None
C07D8.3 ENSEMBL cdna:known chromosome:CEL140:X:7361614:7361994:1 gene:C07D8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078373 4/11 Cross Hyb Matching Probes A 
NM_072872 4/11 Cross Hyb Matching Probes A 
NM_072887 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000026853 4/11 Cross Hyb Matching Probes None
SNAP00000026849 4/11 Cross Hyb Matching Probes None
SNAP00000015087 3/11 Cross Hyb Matching Probes None
GENEFINDER00000015141 4/11 Cross Hyb Matching Probes None
SNAP00000018178 3/11 Cross Hyb Matching Probes None
GENEFINDER00000018194 3/11 Cross Hyb Matching Probes None
GENEFINDER00000022146 4/11 Cross Hyb Matching Probes None
SNAP00000022142 4/11 Cross Hyb Matching Probes None
F07B7.6 4/11 Cross Hyb Matching Probes A 
K06C4.15 3/11 Cross Hyb Matching Probes A 
K09E3.1 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C07D8.3
Entrez Gene 182364 Entrez gene
SwissProt P91023 EMBL-EBI
WormBase CE06773 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 0.0
blast AAA82377 Hypothetical protein K09E3.1 [Caenorhabditis elegans] ref|NP_510774.1| K09E3.1 [Caenorhabditis elegans] 0.0
blast AAK84515 Hypothetical protein F07B7.6 [Caenorhabditis elegans] ref|NP_505273.1| F07B7.6 [Caenorhabditis elegans] 1.0E-164
blast AAB37973 Hypothetical protein C07D8.3 [Caenorhabditis elegans] ref|NP_509245.1| C07D8.3 [Caenorhabditis elegans] 4.0E-64
blast T26836 hypothetical protein Y43F4A.2 - Caenorhabditis elegans 4.0E-58
blast AAA82377 Hypothetical protein K09E3.1 [Caenorhabditis elegans] ref|NP_510774.1| K09E3.1 [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR001395 EMBL-EBI Aldo/keto reductase 2.8E-31
Sequence
Target Sequence 
>C. ELEGANS:172342_X_AT
cttggcgacacgtatcgtaggccccctcaaaaggcgtatcaaccacaaggttgacgcagc
caagcgtatcttggccgagactgaggcaaaaatggaaattctcctgaacatgcctcagga
tcaactcgtcagcagcgaagactcgacttacctcgacgcactactgattcgtctccagac
aatcttagttgcgctcgaaggtatgcgcgagcttatctctgacaaattccgtgacccgga
aatgatggccgacactaatcgccatcaatatcaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGGCGACACGTATCGTAGGCCCC 649 215 57 Antisense
TAGGCCCCCTCAAAAGGCGTATCAA 271 653 74 Antisense
TGGAAATTCTCCTGAACATGCCTCA 666 547 149 Antisense
ATGCCTCAGGATCAACTCGTCAGCA 590 41 166 Antisense
AGCAGCGAAGACTCGACTTACCTCG 383 75 187 Antisense
TTACCTCGACGCACTACTGATTCGT 482 679 204 Antisense
GTCTCCAGACAATCTTAGTTGCGCT 440 471 227 Antisense
GTATGCGCGAGCTTATCTCTGACAA 374 455 257 Antisense
TATCTCTGACAAATTCCGTGACCCG 565 659 270 Antisense
GGAAATGATGGCCGACACTAATCGC 645 525 294 Antisense
CACTAATCGCCATCAATATCACCAG 491 197 309 Antisense
Sequence Source Affymetrix Proprietary Database