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[172341_x_at]

Description F49F1.4 /REP_DB=WormBase Gene ID /WP=CE17087 /TR=Q9GZE6 /GB=AAF99962.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 2.6
(-3)
A 		6.9
(-1.9)
A 		26.5
(3)
A 		4.9
(-2.4)
A 		24
B 2.5
(-3)
A 		4.1
(-2.8)
A 		3.7
(-2.9)
A 		53.1
(3)
A 		51
C 2.3
(-3)
A 		8.3
(2.1)
A 		9.4
(3)
A 		5.2
(-0.5)
A 		7
avr 2.5
(-3) 		6.4
(-1.7) 		13.2
(0.5) 		21.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.5
(-2.5)
A 		3
(-2.9)
A 		29.1
(3)
A 		12.6
(-0.7)
A 		6.4
(-2.1)
A 		2.5
(-3)
A 		27
B 2.2
(-2.9)
A 		27.9
(3)
A 		6.6
(-1.9)
A 		4.2
(-2.4)
A 		16.8
(0.4)
A 		1.8
(-3)
A 		26
C 3.1
(-3)
A 		12.9
(3)
A 		9.9
(1.2)
A 		4.5
(-2.1)
A 		4
(-2.4)
A 		5.5
(-1.5)
A 		10
avr 3.3
(-3) 		14.6
(2.7) 		15.2
(3) 		7.1
(-1.1) 		9.1
(-0.1) 		3.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-2.8)
A 		1.5
(-2.2)
A 		6.9
(3)
A 		0.7
(-3)
A 		6
B 0.8
(-3)
A 		1
(-2.9)
A 		0.9
(-2.9)
A 		11.3
(3)
A 		11
C 0.8
(-3)
A 		2.4
(0.8)
A 		3.3
(3)
A 		0.9
(-2.8)
A 		3
avr 0.8
(-3) 		1.6
(-1.6) 		3.7
(2) 		4.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		1.1
(-2.5)
A 		6.3
(3)
A 		3.2
(-0.3)
A 		1.9
(-1.6)
A 		0.6
(-3)
A 		6
B 0.8
(-2.9)
A 		9.3
(3)
A 		1.6
(-2.4)
A 		1.1
(-2.7)
A 		6.8
(1.3)
A 		0.7
(-3)
A 		9
C 1.2
(-2.4)
A 		3.9
(3)
A 		2.5
(0.2)
A 		0.9
(-3)
A 		1.3
(-2.2)
A 		1.8
(-1.2)
A 		3
avr 0.9
(-3) 		4.8
(3) 		3.5
(1) 		1.7
(-1.8) 		3.3
(0.7) 		1
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172341_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10733
Sequence Type Exemplar sequence
Representative Public ID F49F1.4 NCBI
Target Description F49F1.4 /REP_DB=WormBase Gene ID /WP=CE17087 /TR=Q9GZE6 /GB=AAF99962.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034604 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4115569:4115727:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068076 1/11 Cross Hyb Matching Probes A 
NM_068082 1/11 Cross Hyb Matching Probes A 
SNAP00000034580 1/11 Cross Hyb Matching Probes None
SNAP00000034581 1/11 Cross Hyb Matching Probes None
SNAP00000034582 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034598 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034600 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034601 1/11 Cross Hyb Matching Probes None
SNAP00000043228 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043231 1/11 Cross Hyb Matching Probes None
C35B1.3 1/11 Cross Hyb Matching Probes A 
F49F1.3 1/11 Cross Hyb Matching Probes A 
NM_068082 11/11 Negative Strand Matching Probes A 
F49F1.3 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034604 2 2-21,26-48
Sequence
Target Sequence 
>C. ELEGANS:172341_X_AT
ttccttctcattcttgtttttgtcgcgctattcgccgtggccgttgtggaggccggaggt
ccagatcttggtggaatcttcagtggaatcgggggacttttttcgtcgatcagtggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTTCTCATTCTTGTTTTTGTCG 591 697 22 Antisense
CCGTGGCCGTTGTGGAGGCCGGAGG 440 259 56 Antisense
GGCCGTTGTGGAGGCCGGAGGTCCA 674 533 60 Antisense
TTGTGGAGGCCGGAGGTCCAGATCT 469 707 65 Antisense
GCCGGAGGTCCAGATCTTGGTGGAA 663 283 73 Antisense
GGTCCAGATCTTGGTGGAATCTTCA 651 501 79 Antisense
GATCTTGGTGGAATCTTCAGTGGAA 81 421 85 Antisense
GGAATCTTCAGTGGAATCGGGGGAC 163 531 94 Antisense
TCTTCAGTGGAATCGGGGGACTTTT 390 1 98 Antisense
GGGGACTTTTTTCGTCGATCAGTGG 182 497 113 Antisense
GACTTTTTTCGTCGATCAGTGGAAT 203 373 116 Antisense
Sequence Source Affymetrix Proprietary Database