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[172340_x_at]

Description C35B1.3 /REP_DB=WormBase Gene ID /WP=CE16901 /TR=O45059 /GB=AAC02563.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-3)
A 		1.8
(-1.9)
A 		4.4
(3)
A 		3.2
(0.8)
A 		3
B 1.3
(-3)
A 		3.3
(-1.7)
A 		10.7
(3)
A 		2
(-2.6)
A 		9
C 1.9
(-2.3)
A 		1.6
(-2.8)
A 		1.5
(-3)
A 		5.1
(3)
A 		4
avr 1.5
(-3) 		2.2
(-2) 		5.5
(3) 		3.4
(-0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-2.8)
A 		14.7
(3)
A 		10
(0.8)
A 		7.9
(-0.1)
A 		2
(-2.8)
A 		1.6
(-3)
A 		13
B 1.3
(-2.5)
A 		2.3
(0.1)
A 		1.8
(-1.2)
A 		1.3
(-2.5)
A 		3.4
(3)
A 		1.1
(-3)
A 		2
C 1.9
(-2.9)
A 		2.7
(-2.5)
A 		1.8
(-3)
A 		3.3
(-2.2)
A 		13.1
(3)
A 		2.8
(-2.5)
A 		11
avr 1.7
(-3) 		6.6
(3) 		4.5
(0.4) 		4.2
(0.1) 		6.2
(2.5) 		1.8
(-2.9) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.4
(-3)
A 		0.4
(-3)
A 		1.2
(3)
A 		0.5
(-2.3)
A 		1
B 0.4
(-3)
A 		0.8
(-1.9)
A 		2.5
(3)
A 		0.4
(-3)
A 		2
C 0.6
(-1.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.9
(3)
A 		0
avr 0.5
(-3) 		0.6
(-2.3) 		1.4
(3) 		0.6
(-2.3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.2
(3)
A 		2.2
(-0.8)
A 		2
(-1)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		5
B 0.4
(-2.5)
A 		0.8
(-0.3)
A 		0.4
(-2.5)
A 		0.3
(-3)
A 		1.4
(3)
A 		0.4
(-2.5)
A 		1
C 0.7
(-2.7)
A 		0.8
(-2.5)
A 		0.5
(-3)
A 		0.7
(-2.7)
A 		4.2
(3)
A 		0.9
(-2.4)
A 		4
avr 0.5
(-3) 		2.3
(3) 		1
(-1.3) 		1
(-1.3) 		2.1
(2.3) 		0.6
(-2.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172340_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10770
Sequence Type Exemplar sequence
Representative Public ID C35B1.3 NCBI
Target Description C35B1.3 /REP_DB=WormBase Gene ID /WP=CE16901 /TR=O45059 /GB=AAC02563.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068076 NCBI Caenorhabditis elegans C35B1.3 (C35B1.3) mRNA, complete cds. 11/11 None
SNAP00000043228 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4081144:4081302:1 11/11 None
GENEFINDER00000043231 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4081144:4083348:1 11/11 None
C35B1.3 ENSEMBL cdna:known chromosome:CEL140:IV:4081144:4081481:1 gene:C35B1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068082 4/11 Cross Hyb Matching Probes A 
SNAP00000034581 4/11 Cross Hyb Matching Probes None
SNAP00000034582 4/11 Cross Hyb Matching Probes None
GENEFINDER00000034598 4/11 Cross Hyb Matching Probes None
GENEFINDER00000034600 4/11 Cross Hyb Matching Probes None
F49F1.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl C35B1.3
Entrez Gene 177167 Entrez gene
SwissProt O45059 EMBL-EBI
WormBase CE16901 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500477.1 2 2-21,26-48
C35B1.3 2 2-21,26-48
SNAP00000043228 2 2-21,26-48
GENEFINDER00000043231 4 2-21,26-48,61-83,93-115
Sequence
Target Sequence 
>C. ELEGANS:172340_X_AT
atgaacttactaactcttcttctcgtctttgttgctctcttgactgtaactgtggttgag
gccggagacccagatcttggtggaatcttcagtggaatcggaggtatgctcggatcgatc
ggtggattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACTTACTAACTCTTCTTCTCG 319 45 13 Antisense
TGAACTTACTAACTCTTCTTCTCGT 276 573 14 Antisense
TCTTTGTTGCTCTCTTGACTGTAAC 570 613 38 Antisense
TGCTCTCTTGACTGTAACTGTGGTT 612 579 45 Antisense
AACTGTGGTTGAGGCCGGAGACCCA 118 141 60 Antisense
GCCGGAGACCCAGATCTTGGTGGAA 662 283 73 Antisense
GACCCAGATCTTGGTGGAATCTTCA 636 381 79 Antisense
GGTGGAATCTTCAGTGGAATCGGAG 178 499 91 Antisense
GGAATCGGAGGTATGCTCGGATCGA 135 533 106 Antisense
GGAGGTATGCTCGGATCGATCGGTG 199 517 112 Antisense
TATGCTCGGATCGATCGGTGGATTG 221 657 117 Antisense
Sequence Source Affymetrix Proprietary Database