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[172339_s_at]

Description C07E3.1B /REP_DB=WormBase Gene ID /WP=CE23526 /TR=Q9U3R2 /GB=CAA90102.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 43.5
(1.8)
P 		53.4
(3)
A 		50.2
(2.6)
A 		2.3
(-3)
A 		51
B 52.9
(2.4)
A 		37
(-3)
A 		49.2
(1.2)
A 		54.6
(3)
P 		18
C 60.1
(0.6)
P 		21.3
(-3)
A 		42.4
(-1)
A 		86.1
(3)
P 		65
avr 52.2
(3) 		37.2
(-3) 		47.3
(1) 		47.7
(1.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 37
(1.3)
A 		49.1
(3)
P 		11
(-2.4)
A 		6.9
(-3)
A 		14.5
(-1.9)
A 		38.7
(1.5)
P 		42
B 42.5
(2.1)
A 		10.2
(-3)
A 		38.1
(1.4)
P 		48.5
(3)
A 		27.9
(-0.2)
A 		31.7
(0.4)
M 		38
C 30.2
(-0.8)
A 		28.2
(-1)
A 		33.1
(-0.5)
P 		8.2
(-3)
A 		39.3
(0.1)
A 		67.9
(3)
P 		60
avr 36.6
(0.7) 		29.2
(-1.1) 		27.4
(-1.5) 		21.2
(-3) 		27.2
(-1.6) 		46.1
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.8
(3)
P 		11.6
(1.4)
A 		13.1
(2)
A 		0.3
(-3)
A 		16
B 16.9
(3)
A 		9.1
(-3)
A 		11.4
(-1.2)
A 		11.6
(-1.1)
P 		8
C 19.9
(3)
P 		6.1
(-3)
A 		14.8
(0.8)
A 		14.5
(0.7)
P 		14
avr 17.5
(3) 		8.9
(-2.9) 		13.1
(-0) 		8.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.8
(-1.1)
A 		17.5
(3)
P 		2.4
(-2.8)
A 		1.8
(-3)
A 		4.4
(-2)
A 		9.4
(-0.1)
P 		16
B 14.8
(3)
A 		3.4
(-3)
A 		9.2
(0.1)
P 		12.8
(1.9)
A 		11.3
(1.2)
A 		11.8
(1.4)
M 		11
C 11.2
(-0.3)
A 		8.6
(-1)
A 		8.4
(-1.1)
P 		1.6
(-3)
A 		12.7
(0.2)
A 		22.7
(3)
P 		21
avr 10.9
(0.6) 		9.8
(-0.1) 		6.7
(-2.2) 		5.4
(-3) 		9.5
(-0.3) 		14.6
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172339_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2998
Sequence Type Exemplar sequence
Representative Public ID C07E3.1B NCBI
Target Description C07E3.1B /REP_DB=WormBase Gene ID /WP=CE23526 /TR=Q9U3R2 /GB=CAA90102.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063825(11), NM_063826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063825 NCBI Caenorhabditis elegans C07E3.1a (C07E3.1) mRNA, complete cds. 11/11 A 
NM_063826 NCBI Caenorhabditis elegans C07E3.1b (C07E3.1) mRNA, complete cds. 11/11 None
SNAP00000023197 ENSEMBL cdna:SNAP chromosome:CEL140:II:10347053:10349915:-1 11/11 None
GENEFINDER00000023211 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10347053:10349915:-1 11/11 None
C07E3.1a ENSEMBL cdna:known chromosome:CEL140:II:10347007:10349917:-1 gene:C07E3.1 11/11 A 
C07E3.1b ENSEMBL cdna:known chromosome:CEL140:II:10348278:10349888:-1 gene:C07E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10349562-10349870(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07E3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90093 Hypothetical protein C07E3.1a [Caenorhabditis elegans] ref|NP_496226.1| C07E3.1a [Caenorhabditis elegans] 0.0
blast CAE59378 Hypothetical protein CBG02731 [Caenorhabditis briggsae] 0.0
blast XP_534724 PREDICTED: similar to Tuftelin-interacting protein 11 isoform 1 [Canis familiaris] 1.0E-121
blast XP_534724 PREDICTED: similar to Tuftelin-interacting protein 11 isoform 1 [Canis familiaris] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 3.1E-20
Pfam IPR000467 EMBL-EBI D111/G-patch domain 3.1E-20
Sequence
Target Sequence 
>C. ELEGANS:172339_S_AT
atggatctcgaatacgcaatgaatccaggcggcaggcgacggtttcagaataaggatcag
gcgacatatggtggggagtctttgcacctgacagcgacgatgatgacgatgaacaaggaa
caagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATCTCGAATACGCAATGAATC 104 51 13 Antisense
ATCTCGAATACGCAATGAATCCAGG 121 33 17 Antisense
GCAATGAATCCAGGCGGCAGGCGAC 625 317 28 Antisense
CAATGAATCCAGGCGGCAGGCGACG 460 181 29 Antisense
GCGGCAGGCGACGGTTTCAGAATAA 687 293 41 Antisense
GGCAGGCGACGGTTTCAGAATAAGG 422 535 43 Antisense
GGTTTCAGAATAAGGATCAGGCGAC 202 505 53 Antisense
AGAATAAGGATCAGGCGACATATGG 117 71 59 Antisense
TCTTTGCACCTGACAGCGACGATGA 398 615 91 Antisense
GCACCTGACAGCGACGATGATGACG 510 315 96 Antisense
GATGACGATGAACAAGGAACAAGCC 555 411 114 Antisense
Sequence Source Affymetrix Proprietary Database