[Home] | [Total List]

[172338_x_at]

Description C34D4.1 /REP_DB=WormBase Gene ID /WP=CE27742 /TR=Q18452 /GB=AAB00705.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 51.3
(1.2)
P 		36.8
(-3)
A 		41.8
(-1.6)
A 		57.6
(3)
A 		21
B 36.3
(0.9)
A 		7.6
(-2.8)
A 		6.1
(-3)
A 		53.1
(3)
A 		47
C 88.9
(3)
P 		49.9
(-0.1)
A 		13.3
(-3)
A 		30.3
(-1.7)
A 		76
avr 58.8
(3) 		31.4
(-1.3) 		20.4
(-3) 		47
(1.2) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 55.9
(2.6)
A 		29.9
(-0.2)
A 		60
(3)
P 		2.9
(-3)
A 		47.8
(1.7)
A 		41.4
(1)
A 		57
B 44
(3)
P 		28.9
(-0.5)
A 		35.5
(1)
A 		27.4
(-0.8)
A 		18.1
(-3)
A 		34.5
(0.8)
P 		26
C 56.5
(2.5)
A 		51.6
(1.9)
P 		50.4
(1.8)
A 		11
(-3)
A 		17.6
(-2.2)
A 		60.4
(3)
A 		49
avr 52.1
(3) 		36.8
(0.6) 		48.6
(2.5) 		13.8
(-3) 		27.8
(-0.8) 		45.4
(2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 18.7
(3)
P 		8
(-3)
A 		10.9
(-1.4)
A 		8.4
(-2.8)
A 		11
B 11.6
(3)
A 		1.9
(-2.7)
A 		1.4
(-3)
A 		11.3
(2.8)
A 		10
C 29.4
(3)
P 		14.3
(-0.7)
A 		4.6
(-3)
A 		5.1
(-2.9)
A 		25
avr 19.9
(3) 		8.1
(-2) 		5.6
(-3) 		8.3
(-1.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.3
(1.2)
A 		10.6
(1.3)
A 		13.1
(2.4)
P 		0.7
(-3)
A 		14.4
(3)
A 		10.1
(1.1)
A 		14
B 15.3
(3)
P 		9.6
(-1.2)
A 		8.6
(-2)
A 		7.2
(-3)
A 		7.3
(-2.9)
A 		12.9
(1.2)
P 		8
C 21
(3)
A 		15.7
(1.3)
P 		12.8
(0.4)
A 		2.2
(-3)
A 		5.7
(-1.9)
A 		20.2
(2.7)
A 		19
avr 15.5
(3) 		12
(1.3) 		11.5
(1) 		3.4
(-3) 		9.1
(-0.2) 		14.4
(2.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172338_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8665
Sequence Type Exemplar sequence
Representative Public ID C34D4.1 NCBI
Target Description C34D4.1 /REP_DB=WormBase Gene ID /WP=CE27742 /TR=Q18452 /GB=AAB00705.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068725
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000029594 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7157287:7160092:1 None
NM_068725 NCBI Caenorhabditis elegans C34D4.1 (C34D4.1) mRNA, complete cds. None
SNAP00000029576 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7157554:7160092:1 None
C34D4.1 ENSEMBL cdna:known chromosome:CEL140:IV:7156883:7160092:1 gene:C34D4.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7156892-7159775(+) 91.18 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D4.1
Entrez Gene 177490 Entrez gene
SwissProt Q18452 EMBL-EBI
WormBase CE27742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00705 Hypothetical protein C34D4.1 [Caenorhabditis elegans] ref|NP_501126.1| C34D4.1 [Caenorhabditis elegans] 0.0
blast AAB00705 Hypothetical protein C34D4.1 [Caenorhabditis elegans] ref|NP_501126.1| C34D4.1 [Caenorhabditis elegans] 1.0E-179
blast AAB00705 Hypothetical protein C34D4.1 [Caenorhabditis elegans] ref|NP_501126.1| C34D4.1 [Caenorhabditis elegans] 1.0E-178
blast T34156 hypothetical protein C42D4.7 - Caenorhabditis elegans 1.0E-159
blast CAE61815 Hypothetical protein CBG05783 [Caenorhabditis briggsae] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:172338_X_AT
ggaagcgggaacgttcgaaatctgtaacagatatcagaaagaaactggagcaagaagaag
acaagaaaagaaagaaagaggaagaagctaaaaatgaaaagatcaaagaagcacaggcag
cttttctagcatggaaacggaaaaaggaagaactattgaatgaagaagctgaaaagttga
aaaaggaacaagttcaaaaacaattggaagaatctgaaaaaatgacaagattgtcgttgg
ctaatgaagcatacgaaacatggattgaattgaaagaatcggaacgagagtttattgccg
attttgtgcttattgaagctccgccgattccatggcttccaccgagtaatttgattccaa
ggcaattcgtgagatcgtcgaatggaaatcggttagttttgttattaatgcctcttttga
aatcaaattgcaaacgcgcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGCGGGAACGTTCGAAATCTGT 236 529 1070 Antisense
AGCACAGGCAGCTTTTCTAGCATGG 699 75 1179 Antisense
GACAAGATTGTCGTTGGCTAATGAA 690 363 1293 Antisense
GAGTTTATTGCCGATTTTGTGCTTA 503 397 1357 Antisense
TGTGCTTATTGAAGCTCCGCCGATT 448 555 1374 Antisense
ATTCCATGGCTTCCACCGAGTAATT 633 7 1396 Antisense
GCTTCCACCGAGTAATTTGATTCCA 441 305 1404 Antisense
ATTCCAAGGCAATTCGTGAGATCGT 187 7 1423 Antisense
GTTAGTTTTGTTATTAATGCCTCTT 388 445 1461 Antisense
ATTAATGCCTCTTTTGAAATCAAAT 440 11 1473 Antisense
GAAATCAAATTGCAAACGCGCTTCA 548 361 1488 Antisense
Sequence Source Affymetrix Proprietary Database