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[172337_x_at]

Description C18B12.1 /REP_DB=WormBase Gene ID /WP=CE18508 /TR=Q9XX99 /GB=CAA20924.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 343
1 2 3 4 range
A 44.4
(-3)
M 		47.9
(-2.8)
A 		45
(-3)
A 		145.5
(3)
P 		101
B 54.6
(2.6)
A 		40.8
(1.1)
A 		5.1
(-3)
A 		57.7
(3)
P 		53
C 45.9
(-2.9)
P 		58
(-2.7)
M 		42
(-3)
P 		348.2
(3)
P 		306
avr 48.3
(-2.3) 		48.9
(-2.3) 		30.7
(-3) 		183.8
(3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 11.1
(-2.2)
A 		5.2
(-2.8)
A 		62.2
(3)
P 		2.8
(-3)
A 		41.7
(0.9)
A 		51.1
(1.9)
A 		59
B 43.3
(3)
A 		42.3
(2.8)
P 		13.1
(-3)
A 		26.5
(-0.3)
A 		21.4
(-1.4)
A 		25.4
(-0.6)
A 		30
C 32.8
(-0.1)
A 		18.6
(-1.5)
A 		29.9
(-0.4)
A 		65
(3)
A 		38
(0.4)
A 		2.6
(-3)
A 		62
avr 29.1
(0.3) 		22
(-3) 		35.1
(3) 		31.4
(1.3) 		33.7
(2.4) 		26.4
(-1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 16.1
(0.1)
M 		10.4
(-3)
A 		11.8
(-2.2)
A 		21.3
(3)
P 		11
B 17.4
(3)
A 		10.1
(0.3)
A 		1.2
(-3)
A 		12.3
(1.1)
P 		16
C 15.2
(-2.9)
P 		16.7
(-2.7)
M 		14.6
(-3)
P 		58.7
(3)
P 		44
avr 16.2
(-1.1) 		12.4
(-2.1) 		9.2
(-3) 		30.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-2.4)
A 		1.8
(-2.5)
A 		13.5
(3)
P 		0.7
(-3)
A 		12.6
(2.6)
A 		12.4
(2.5)
A 		13
B 15.1
(3)
A 		14.1
(2.5)
P 		3.2
(-3)
A 		7
(-1.1)
A 		8.7
(-0.2)
A 		9.5
(0.2)
A 		12
C 12.1
(2.5)
A 		5.7
(-0.6)
A 		7.6
(0.3)
A 		13.1
(3)
A 		12.3
(2.6)
A 		0.9
(-3)
A 		12
avr 9.7
(0.9) 		7.2
(-2.6) 		8.1
(-1.3) 		6.9
(-3) 		11.2
(3) 		7.6
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172337_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17665
Sequence Type Exemplar sequence
Representative Public ID C18B12.1 NCBI
Target Description C18B12.1 /REP_DB=WormBase Gene ID /WP=CE18508 /TR=Q9XX99 /GB=CAA20924.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078094 NCBI Caenorhabditis elegans C18B12.1 (C18B12.1) mRNA, complete cds. 11/11 None
C18B12.1 ENSEMBL cdna:known chromosome:CEL140:X:15012600:15012842:1 gene:C18B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15012599-15012842(+) 96.3 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B12.1
Entrez Gene 182774 Entrez gene
SwissProt Q9XX99 EMBL-EBI
WormBase CE18508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20924 Hypothetical protein C18B12.1 [Caenorhabditis elegans] ref|NP_510495.1| C18B12.1 [Caenorhabditis elegans] 5.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510495.1 1 13-35
C18B12.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:172337_X_AT
atgttgacgtgttccaaatgcacttgttcaataactttcagttttatagaacttataaaa
aacatagtgcatatgtttgtcactttaattgcccttgttgtaccatgttcggttgacttt
actgaacaaaagttcagctgggaaattgaacgttctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTGACGTGTTCCAAATGCACTT 525 47 13 Antisense
GTGTTCCAAATGCACTTGTTCAATA 339 485 21 Antisense
GCACTTGTTCAATAACTTTCAGTTT 240 315 32 Antisense
ACATAGTGCATATGTTTGTCACTTT 417 105 74 Antisense
ATGTTTGTCACTTTAATTGCCCTTG 642 47 85 Antisense
GTCACTTTAATTGCCCTTGTTGTAC 319 465 91 Antisense
TAATTGCCCTTGTTGTACCATGTTC 46 635 98 Antisense
GCCCTTGTTGTACCATGTTCGGTTG 115 287 103 Antisense
GTACCATGTTCGGTTGACTTTACTG 590 457 112 Antisense
TTCGGTTGACTTTACTGAACAAAAG 675 607 120 Antisense
TCAGCTGGGAAATTGAACGTTCTAG 313 623 146 Antisense
Sequence Source Affymetrix Proprietary Database