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[172335_x_at] transposase

Description F56A4.8 /REP_DB=WormBase Gene ID /WP=CE23777 /TR=Q9N5R2 /GB=AAF39846.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 61      6grp_total > 01      4grp_total > 02      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2244
1 2 3 4 range
A 369.3
(-3)
P 		520.3
(-2.4)
P 		392
(-2.9)
P 		1861.4
(3)
P 		1492
B 527.2
(-0.3)
P 		453.9
(-1.3)
P 		325.9
(-3)
P 		770.8
(3)
P 		445
C 422.5
(-2.7)
P 		411.9
(-2.7)
P 		293.5
(-3)
P 		2537.4
(3)
P 		2244
avr 439.7
(-2.6) 		462
(-2.5) 		337.1
(-3) 		1723.2
(3) 		1386

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 608.8
(2.6)
P 		389.3
(-0.9)
P 		637.4
(3)
P 		254.4
(-3)
P 		507.7
(1)
P 		465.5
(0.3)
P 		383
B 424.4
(-2.8)
P 		605.3
(3)
P 		530.4
(0.6)
P 		459.9
(-1.6)
P 		451.7
(-1.9)
P 		416.8
(-3)
P 		189
C 434.8
(-1.6)
P 		866.3
(3)
P 		328.7
(-2.7)
P 		459.8
(-1.3)
P 		303.9
(-3)
P 		363.4
(-2.4)
P 		562
avr 489.3
(-0.4) 		620.3
(3) 		498.8
(-0.2) 		391.4
(-3) 		421.1
(-2.2) 		415.2
(-2.4) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 134.5
(-1.9)
P 		112.9
(-2.6)
P 		102.5
(-3)
P 		272.5
(3)
P 		170
B 168.1
(3)
P 		112.1
(-0.6)
P 		75.5
(-3)
P 		164.3
(2.8)
P 		93
C 139.9
(-2.3)
P 		118.4
(-2.7)
P 		102.3
(-3)
P 		427.8
(3)
P 		326
avr 147.5
(-1.3) 		114.5
(-2.4) 		93.4
(-3) 		288.2
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 112.2
(0.2)
P 		138.5
(2)
P 		138.8
(2)
P 		64.5
(-3)
P 		153.2
(3)
P 		113.3
(0.3)
P 		89
B 147.7
(-1.1)
P 		201.5
(3)
P 		128.8
(-2.5)
P 		121.8
(-3)
P 		183.5
(1.6)
P 		155.4
(-0.5)
P 		80
C 161.2
(-0.4)
P 		264.3
(3)
P 		83.7
(-3)
P 		92.5
(-2.7)
P 		98.3
(-2.5)
P 		121.7
(-1.7)
P 		181
avr 140.4
(-0.4) 		201.4
(3) 		117.1
(-1.7) 		92.9
(-3) 		145
(-0.1) 		130.1
(-0.9) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172335_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14800
Sequence Type Exemplar sequence
Representative Public ID F56A4.8 NCBI
Target Description F56A4.8 /REP_DB=WormBase Gene ID /WP=CE23777 /TR=Q9N5R2 /GB=AAF39846.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064895(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064895 NCBI Caenorhabditis elegans T12B5.6 (transposase) mRNA, complete cds. 9/11 A 
SNAP00000036928 ENSEMBL cdna:SNAP chromosome:CEL140:I:8380875:8381894:1 10/11 None
GENEFINDER00000036932 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8380875:8385660:1 10/11 None
SNAP00000034259 ENSEMBL cdna:SNAP chromosome:CEL140:I:930448:932863:1 10/11 None
GENEFINDER00000034284 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:931844:932863:1 10/11 None
SNAP00000015957 ENSEMBL cdna:SNAP chromosome:CEL140:I:4752174:4753193:1 10/11 None
GENEFINDER00000015966 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4752174:4759485:1 10/11 None
SNAP00000031034 ENSEMBL cdna:SNAP chromosome:CEL140:I:12409672:12410691:-1 10/11 None
GENEFINDER00000031058 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12409692:12412610:-1 10/11 None
SNAP00000001110 ENSEMBL cdna:SNAP chromosome:CEL140:II:11229658:11236287:1 10/11 None
GENEFINDER00000001126 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11226585:11232690:1 10/11 None
SNAP00000014784 ENSEMBL cdna:SNAP chromosome:CEL140:II:3455766:3457142:-1 10/11 None
GENEFINDER00000014798 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3455921:3457172:-1 10/11 None
SNAP00000029284 ENSEMBL cdna:SNAP chromosome:CEL140:II:1031767:1032786:-1 10/11 None
GENEFINDER00000029301 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1031767:1032786:-1 10/11 None
SNAP00000032334 ENSEMBL cdna:SNAP chromosome:CEL140:II:3601727:3602746:-1 10/11 None
GENEFINDER00000032337 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3599556:3602746:-1 10/11 None
SNAP00000034941 ENSEMBL cdna:SNAP chromosome:CEL140:II:4927000:4928019:1 10/11 None
GENEFINDER00000034963 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4927000:4928966:1 10/11 None
SNAP00000037185 ENSEMBL cdna:SNAP chromosome:CEL140:II:10904545:10905564:1 10/11 None
GENEFINDER00000037194 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10904545:10905808:1 10/11 None
SNAP00000038763 ENSEMBL cdna:SNAP chromosome:CEL140:II:2498372:2498818:1 10/11 None
SNAP00000043072 ENSEMBL cdna:SNAP chromosome:CEL140:II:15172013:15173032:1 10/11 None
GENEFINDER00000043127 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15172013:15173032:1 10/11 None
SNAP00000010962 ENSEMBL cdna:SNAP chromosome:CEL140:III:1122980:1123972:-1 9/11 None
GENEFINDER00000010967 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1122980:1123972:-1 9/11 None
SNAP00000028398 ENSEMBL cdna:SNAP chromosome:CEL140:III:3858283:3862935:-1 10/11 None
GENEFINDER00000028402 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3858283:3862935:-1 10/11 None
GENEFINDER00000007710 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:933696:936054:-1 9/11 None
SNAP00000007696 ENSEMBL cdna:SNAP chromosome:CEL140:III:934052:935554:-1 9/11 None
SNAP00000006144 ENSEMBL cdna:SNAP chromosome:CEL140:III:12492981:12519375:-1 10/11 None
GENEFINDER00000006277 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12518356:12519375:-1 10/11 None
SNAP00000041605 ENSEMBL cdna:SNAP chromosome:CEL140:III:7105365:7105811:-1 10/11 None
GENEFINDER00000014151 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1292041:1294464:-1 10/11 None
SNAP00000014144 ENSEMBL cdna:SNAP chromosome:CEL140:III:1293445:1294464:-1 10/11 None
SNAP00000034656 ENSEMBL cdna:SNAP chromosome:CEL140:III:6575877:6576896:1 10/11 None
GENEFINDER00000034662 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6575877:6577207:1 10/11 None
SNAP00000016400 ENSEMBL cdna:SNAP chromosome:CEL140:III:4297456:4301214:-1 10/11 None
GENEFINDER00000016409 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4297456:4299152:-1 10/11 None
SNAP00000000183 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16575108:16576900:-1 9/11 None
GENEFINDER00000000219 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16575108:16578475:-1 9/11 None
SNAP00000002873 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11869583:11870602:1 10/11 None
GENEFINDER00000002886 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11869583:11875613:1 10/11 None
SNAP00000004220 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14012427:14013446:-1 10/11 None
GENEFINDER00000004233 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14012173:14013446:-1 10/11 None
SNAP00000006183 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9412660:9413679:-1 10/11 None
GENEFINDER00000006188 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9410246:9413679:-1 10/11 None
SNAP00000009025 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9502850:9503869:1 10/11 None
GENEFINDER00000009034 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9502850:9503869:1 10/11 None
SNAP00000010754 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14256383:14257402:1 9/11 None
GENEFINDER00000010759 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14256383:14264378:1 9/11 None
SNAP00000011901 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13457780:13459910:-1 10/11 None
GENEFINDER00000011916 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13457210:13464717:-1 10/11 None
SNAP00000013652 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12315242:12316261:1 10/11 None
GENEFINDER00000013654 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12315242:12316241:1 10/11 None
SNAP00000018406 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16008023:16009042:1 10/11 None
GENEFINDER00000018438 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16008023:16009042:1 10/11 None
SNAP00000019475 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11238920:11239939:-1 10/11 None
GENEFINDER00000019481 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11238226:11241424:-1 10/11 None
SNAP00000020442 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7524483:7525502:1 10/11 None
GENEFINDER00000020447 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7524483:7534052:1 10/11 None
SNAP00000023153 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4219264:4221529:-1 10/11 None
GENEFINDER00000023160 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4219264:4221529:-1 10/11 None
SNAP00000030263 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11192734:11193753:-1 10/11 None
GENEFINDER00000030275 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11192574:11193753:-1 10/11 None
SNAP00000030831 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15498735:15499754:-1 10/11 None
GENEFINDER00000030884 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15495901:15499754:-1 10/11 None
SNAP00000035965 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13915557:13916576:-1 10/11 None
GENEFINDER00000035968 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13914664:13916576:-1 10/11 None
SNAP00000042432 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14545577:14546596:-1 9/11 None
GENEFINDER00000042443 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14545577:14546596:-1 9/11 None
SNAP00000043356 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13113923:13114942:-1 9/11 None
GENEFINDER00000043368 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13113175:13114942:-1 9/11 None
SNAP00000044303 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17218519:17219538:1 10/11 None
GENEFINDER00000044308 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17218519:17223572:1 10/11 None
SNAP00000000581 ENSEMBL cdna:SNAP chromosome:CEL140:V:16298425:16299444:-1 10/11 None
GENEFINDER00000000590 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16298425:16299444:-1 10/11 None
SNAP00000009346 ENSEMBL cdna:SNAP chromosome:CEL140:V:2172653:2173672:1 10/11 None
GENEFINDER00000009357 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2172653:2174240:1 10/11 None
SNAP00000011461 ENSEMBL cdna:SNAP chromosome:CEL140:V:17198536:17198982:1 10/11 None
SNAP00000016167 ENSEMBL cdna:SNAP chromosome:CEL140:V:17905360:17906379:1 10/11 None
SNAP00000017216 ENSEMBL cdna:SNAP chromosome:CEL140:V:10776631:10777639:1 10/11 None
SNAP00000025759 ENSEMBL cdna:SNAP chromosome:CEL140:V:3914630:3915649:-1 10/11 None
GENEFINDER00000025773 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3914630:3915649:-1 10/11 None
SNAP00000028602 ENSEMBL cdna:SNAP chromosome:CEL140:V:15303222:15304241:-1 9/11 None
GENEFINDER00000028605 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15301776:15307639:-1 9/11 None
SNAP00000029964 ENSEMBL cdna:SNAP chromosome:CEL140:V:2346540:2347559:-1 10/11 None
GENEFINDER00000029977 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2346560:2347559:-1 10/11 None
SNAP00000031719 ENSEMBL cdna:SNAP chromosome:CEL140:V:3789970:3797535:1 9/11 None
GENEFINDER00000031728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3795190:3797535:1 9/11 None
SNAP00000032945 ENSEMBL cdna:SNAP chromosome:CEL140:V:2453337:2455520:-1 10/11 None
GENEFINDER00000032955 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2453927:2455520:-1 10/11 None
SNAP00000034548 ENSEMBL cdna:SNAP chromosome:CEL140:V:11322139:11324299:-1 10/11 None
GENEFINDER00000034558 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11317672:11324299:-1 10/11 None
SNAP00000039554 ENSEMBL cdna:SNAP chromosome:CEL140:V:7060064:7060510:1 10/11 None
SNAP00000039932 ENSEMBL cdna:SNAP chromosome:CEL140:V:18745354:18746421:1 10/11 None
GENEFINDER00000039947 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18745354:18746421:1 10/11 None
SNAP00000042303 ENSEMBL cdna:SNAP chromosome:CEL140:V:4312506:4313525:1 10/11 None
GENEFINDER00000042309 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4312506:4313525:1 10/11 None
SNAP00000043318 ENSEMBL cdna:SNAP chromosome:CEL140:V:2561616:2570571:-1 10/11 None
GENEFINDER00000043322 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2562779:2563798:-1 10/11 None
SNAP00000044321 ENSEMBL cdna:SNAP chromosome:CEL140:V:15490601:15495187:-1 10/11 None
GENEFINDER00000044330 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15488816:15493519:-1 10/11 None
SNAP00000042120 ENSEMBL cdna:SNAP chromosome:CEL140:X:17060701:17061720:1 10/11 None
GENEFINDER00000042126 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17060701:17061720:1 10/11 None
SNAP00000031924 ENSEMBL cdna:SNAP chromosome:CEL140:X:5757242:5758261:1 9/11 None
GENEFINDER00000031931 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5757242:5758261:1 9/11 None
GENEFINDER00000010012 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1921704:1928654:-1 10/11 None
SNAP00000010004 ENSEMBL cdna:SNAP chromosome:CEL140:X:1927772:1928695:-1 10/11 None
SNAP00000019165 ENSEMBL cdna:SNAP chromosome:CEL140:X:17013375:17017727:1 10/11 None
GENEFINDER00000019172 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17013375:17017727:1 10/11 None
GENEFINDER00000019174 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17022182:17032011:-1 10/11 None
SNAP00000019168 ENSEMBL cdna:SNAP chromosome:CEL140:X:17030992:17032011:-1 10/11 None
GENEFINDER00000022362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:47998:60750:1 10/11 None
SNAP00000022299 ENSEMBL cdna:SNAP chromosome:CEL140:X:53379:54398:1 10/11 None
SNAP00000043681 ENSEMBL cdna:SNAP chromosome:CEL140:X:3369514:3370992:-1 10/11 None
GENEFINDER00000043691 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3369514:3371087:-1 10/11 None
GENEFINDER00000028092 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15781194:15783627:-1 10/11 None
SNAP00000028078 ENSEMBL cdna:SNAP chromosome:CEL140:X:15782608:15783627:-1 10/11 None
T12B5.6 ENSEMBL cdna:known chromosome:CEL140:III:933572:936054:-1 gene:T12B5.6 9/11 A 
Y57E12AL.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:7059359:7060558:1 gene:Y57E12AL.3 10/11 A 
D1054.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:10776631:10777635:1 gene:D1054.4 10/11 A 
Y68A4A.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17197962:17198982:1 gene:Y68A4A.4 10/11 A 
H28G03.5 ENSEMBL cdna:pseudogene chromosome:CEL140:X:5232209:5233228:-1 gene:H28G03.5 9/11 A 
Y7A5A.4 ENSEMBL cdna:known chromosome:CEL140:X:15781543:15783627:-1 gene:Y7A5A.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029398 7/11 Cross Hyb Matching Probes None
SNAP00000029389 7/11 Cross Hyb Matching Probes None
SNAP00000013876 5/11 Cross Hyb Matching Probes None
GENEFINDER00000013879 5/11 Cross Hyb Matching Probes None
SNAP00000014421 1/11 Cross Hyb Matching Probes None
SNAP00000009393 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009402 8/11 Cross Hyb Matching Probes None
GENEFINDER00000017233 2/11 Cross Hyb Matching Probes None
SNAP00000019762 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039561 6/11 Cross Hyb Matching Probes None
SNAP00000008037 5/11 Cross Hyb Matching Probes None
B0280.6 5/11 Cross Hyb Matching Probes None
T06A1.6 6/11 Cross Hyb Matching Probes None
T06A1.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title transposase
Ensembl T12B5.6
Y57E12AL.3
D1054.4
Y68A4A.4
H28G03.5
Y7A5A.4
Entrez Gene 188445 Entrez gene
SwissProt Q9TZ30 EMBL-EBI
WormBase CE20064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T18779 transposase containing protein - Caenorhabditis el