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[172332_at]

Description T24D8.6 /REP_DB=WormBase Gene ID /WP=CE05010 /TR=Q22742 /GB=AAA81449.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 23.7
(-1.1)
A 		1.4
(-3)
A 		9.9
(-2.3)
A 		70.4
(3)
A 		69
B 17.1
(-0.4)
A 		4.2
(-3)
A 		22.8
(0.7)
A 		34.5
(3)
P 		30
C 23
(-1.6)
A 		24.9
(-1.4)
A 		11.1
(-3)
A 		63.8
(3)
A 		53
avr 21.3
(-1.6) 		10.2
(-3) 		14.6
(-2.4) 		56.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.5
(-1.6)
A 		30
(3)
A 		11.9
(-2.1)
A 		29.8
(2.9)
A 		23.2
(1.1)
A 		8.5
(-3)
A 		22
B 2.9
(-3)
A 		11.1
(-1.3)
A 		31.2
(3)
A 		12.8
(-0.9)
A 		14.4
(-0.6)
A 		8.5
(-1.8)
A 		28
C 0.5
(-3)
A 		7
(-1.2)
A 		22.4
(3)
A 		12.4
(0.3)
A 		2.8
(-2.4)
A 		7.8
(-1)
A 		22
avr 5.6
(-3) 		16
(0.9) 		21.8
(3) 		18.3
(1.7) 		13.5
(-0.1) 		8.3
(-2) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(2)
A 		0.3
(-3)
A 		2.6
(-1.6)
A 		10.3
(3)
A 		10
B 5.4
(1.1)
A 		1
(-3)
A 		5.3
(1)
A 		7.4
(3)
P 		6
C 7.6
(0.2)
A 		7.2
(-0.1)
A 		3.9
(-3)
A 		10.8
(3)
A 		7
avr 7.2
(0.9) 		2.8
(-3) 		3.9
(-2) 		9.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.5
(-2.7)
A 		10.7
(3)
A 		2.6
(-2.7)
A 		7.6
(0.8)
A 		7
(0.4)
A 		2.1
(-3)
A 		9
B 1
(-3)
A 		3.7
(-0.5)
A 		7.6
(3)
A 		3.4
(-0.8)
A 		5.8
(1.4)
A 		3.2
(-1)
A 		7
C 0.2
(-3)
A 		2.1
(-0.9)
A 		5.7
(3)
A 		2.5
(-0.5)
A 		0.9
(-2.2)
A 		2.6
(-0.4)
A 		6
avr 1.2
(-3) 		5.5
(3) 		5.3
(2.7) 		4.5
(1.6) 		4.6
(1.7) 		2.6
(-1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18316
Sequence Type Exemplar sequence
Representative Public ID T24D8.6 NCBI
Target Description T24D8.6 /REP_DB=WormBase Gene ID /WP=CE05010 /TR=Q22742 /GB=AAA81449.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076028 NCBI Caenorhabditis elegans T24D8.6 (T24D8.6) mRNA, complete cds. 11/11 None
T24D8.6 ENSEMBL cdna:known chromosome:CEL140:X:2365693:2365935:-1 gene:T24D8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2365692-2365935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D8.6
Entrez Gene 188858 Entrez gene
SwissProt Q22742 EMBL-EBI
WormBase CE05010 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81449 Hypothetical protein T24D8.6 [Caenorhabditis elegans] ref|NP_508429.1| T24D8.6 [Caenorhabditis elegans] 3.0E-29
Sequence
Target Sequence 
>C. ELEGANS:172332_AT
gaaactaaagcagtggaccttggaacatttttttttaattttatgctcatctgcgtcgct
agcagattattggatttgatttatgatattttcaacaaagttgaaattgagcacatcagc
ataggagatgtcgcgttagacgagaacagcaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTAAAGCAGTGGACCTTGGAA 583 355 19 Antisense
GCAGTGGACCTTGGAACATTTTTTT 652 309 28 Antisense
TAATTTTATGCTCATCTGCGTCGCT 271 635 54 Antisense
TTATGCTCATCTGCGTCGCTAGCAG 197 681 59 Antisense
TGCTCATCTGCGTCGCTAGCAGATT 444 579 62 Antisense
GCGTCGCTAGCAGATTATTGGATTT 88 293 71 Antisense
ATTGGATTTGATTTATGATATTTTC 128 5 87 Antisense
GAAATTGAGCACATCAGCATAGGAG 178 363 121 Antisense
CAGCATAGGAGATGTCGCGTTAGAC 197 203 135 Antisense
GGAGATGTCGCGTTAGACGAGAACA 361 517 142 Antisense
GTCGCGTTAGACGAGAACAGCAATA 371 475 148 Antisense
Sequence Source Affymetrix Proprietary Database