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[172331_x_at]

Description F55C9.11 /REP_DB=WormBase Gene ID /WP=CE18743 /TR=Q9XUY6 /GB=CAB04476.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 1.2
(-3)
A 		10.3
(-1.4)
A 		23.8
(1.1)
A 		34.6
(3)
A 		33
B 33
(3)
A 		25.4
(0.5)
A 		29.4
(1.8)
A 		15.1
(-3)
A 		18
C 5.1
(-2.8)
A 		51.9
(3)
A 		3.3
(-3)
A 		17.3
(-1.3)
A 		49
avr 13.1
(-3) 		29.2
(3) 		18.8
(-0.9) 		22.3
(0.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 17.1
(0)
A 		30.4
(3)
A 		25.6
(1.9)
A 		25.1
(1.8)
A 		4
(-2.9)
A 		3.5
(-3)
A 		27
B 3.6
(-2.6)
A 		22.7
(3)
A 		2.7
(-2.8)
A 		3.6
(-2.6)
A 		3.6
(-2.6)
A 		2.1
(-3)
A 		21
C 22.1
(3)
A 		6.5
(-1.6)
A 		6.7
(-1.5)
A 		2.8
(-2.6)
A 		1.6
(-3)
A 		5.1
(-2)
A 		21
avr 14.3
(1) 		19.9
(3) 		11.7
(0.1) 		10.5
(-0.4) 		3.1
(-3) 		3.6
(-2.8) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 0.4
(-3)
A 		2.2
(-1.1)
A 		6.2
(3)
A 		5.1
(1.9)
A 		6
B 10.5
(3)
A 		6.3
(-0.5)
A 		6.8
(-0)
A 		3.2
(-3)
A 		7
C 1.7
(-2.7)
A 		14.9
(3)
A 		1.1
(-3)
A 		2.9
(-2.2)
A 		14
avr 4.2
(-2.3) 		7.8
(3) 		4.7
(-1.5) 		3.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.1
(-1.7)
A 		10.8
(3)
A 		5.6
(-0.2)
A 		6.4
(0.3)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		10
B 1.2
(-2.6)
A 		7.6
(3)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		1.5
(-2.3)
A 		0.8
(-2.9)
A 		7
C 8.2
(3)
A 		2
(-1.8)
A 		1.7
(-2.1)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		1.7
(-2.1)
A 		8
avr 4.2
(0.3) 		6.8
(3) 		2.7
(-1.3) 		2.6
(-1.4) 		1.1
(-3) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172331_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13671
Sequence Type Exemplar sequence
Representative Public ID F55C9.11 NCBI
Target Description F55C9.11 /REP_DB=WormBase Gene ID /WP=CE18743 /TR=Q9XUY6 /GB=CAB04476.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075359(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075359 NCBI Caenorhabditis elegans F55C9.11 (F55C9.11) mRNA, complete cds. 9/11 None
F55C9.11 ENSEMBL cdna:known chromosome:CEL140:V:19309815:19310156:-1 gene:F55C9.11 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075358 1/11 Cross Hyb Matching Probes A 
SNAP00000026278 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026288 1/11 Cross Hyb Matching Probes None
F55C9.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19309812-19310156(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.11
Entrez Gene 186299 Entrez gene
SwissProt Q9XUY6 EMBL-EBI
WormBase CE36442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04476 Hypothetical protein F55C9.11 [Caenorhabditis elegans] ref|NP_507760.2| F55C9.11 [Caenorhabditis elegans] 1.0E-23
blast CAB04469 Hypothetical protein F55C9.10 [Caenorhabditis elegans] ref|NP_507759.1| F55C9.10 [Caenorhabditis elegans] 2.0E-18
blast CAB03965 Hypothetical protein C43D7.8 [Caenorhabditis elegans] ref|NP_507761.1| C43D7.8 [Caenorhabditis elegans] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.1E-6
Sequence
Target Sequence 
>C. ELEGANS:172331_X_AT
tcccgattctccaactacctgagaaatctctcaaaatagcgattcaaagtctgactttgg
aagaattaataaaattctctctcatttcaaaatctacaaaacgggcagcagaatcgttga
atcttcaggctgatccctttttagaagatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGATTCTCCAACTACCTGAGAA 217 597 32 Antisense
CTCCAACTACCTGAGAAATCTCTCA 422 235 40 Antisense
AAATAGCGATTCAAAGTCTGACTTT 59 117 65 Antisense
AAAGTCTGACTTTGGAAGAATTAAT 15 111 77 Antisense
TTAATAAAATTCTCTCTCATTTCAA 294 685 97 Antisense
AAAATTCTCTCTCATTTCAAAATCT 609 133 102 Antisense
TCAAAATCTACAAAACGGGCAGCAG 622 627 118 Antisense
CGGGCAGCAGAATCGTTGAATCTTC 38 245 133 Antisense
GAATCTTCAGGCTGATCCCTTTTTA 254 329 150 Antisense
TCTTCAGGCTGATCCCTTTTTAGAA 52 615 153 Antisense
GGCTGATCCCTTTTTAGAAGATTTG 693 537 159 Antisense
Sequence Source Affymetrix Proprietary Database