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[172330_x_at]

Description C17B7.6 /REP_DB=WormBase Gene ID /WP=CE16854 /TR=O45154 /GB=AAC04400.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 2.8
(-3)
A 		50.4
(-0.1)
A 		19.2
(-2)
A 		100.3
(3)
P 		98
B 40.9
(-0.7)
P 		26.8
(-2.1)
P 		18
(-3)
A 		77.2
(3)
P 		59
C 5.1
(-3)
A 		7.9
(-2.9)
A 		11.4
(-2.8)
A 		193.7
(3)
P 		189
avr 16.3
(-3) 		28.4
(-2.3) 		16.2
(-3) 		123.7
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 56.4
(2.2)
A 		33.9
(-0.9)
A 		62.5
(3)
P 		18.5
(-3)
A 		49.4
(1.2)
A 		26.5
(-1.9)
A 		44
B 4.3
(-3)
A 		10
(-1.7)
A 		12.6
(-1.2)
A 		31.3
(3)
A 		12.6
(-1.2)
A 		20.1
(0.5)
M 		27
C 23
(-0.4)
A 		24.1
(-0.3)
A 		48.7
(3)
A 		43.8
(2.3)
A 		3.6
(-3)
A 		28.9
(0.4)
A 		45
avr 27.9
(-1.1) 		22.7
(-2.8) 		41.3
(3) 		31.2
(-0.1) 		21.9
(-3) 		25.2
(-2) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1
(-3)
A 		10.9
(1.3)
A 		5
(-1.2)
A 		14.7
(3)
P 		14
B 13
(1.3)
P 		6.6
(-1.8)
P 		4.2
(-3)
A 		16.5
(3)
P 		12
C 1.7
(-3)
A 		2.3
(-2.9)
A 		4
(-2.6)
A 		32.7
(3)
P 		31
avr 5.2
(-2.7) 		6.6
(-2.2) 		4.4
(-3) 		21.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.4
(0.4)
A 		12.1
(1.4)
A 		13.6
(2.2)
P 		4.7
(-3)
A 		14.9
(3)
A 		6.4
(-2)
A 		10
B 1.5
(-3)
A 		3.3
(-1.4)
A 		3.1
(-1.6)
A 		8.3
(3)
A 		5.1
(0.2)
A 		7.5
(2.3)
M 		7
C 8.5
(0.9)
A 		7.4
(0.3)
A 		12.4
(3)
A 		8.8
(1.1)
A 		1.2
(-3)
A 		9.7
(1.6)
A 		11
avr 6.8
(-3) 		7.6
(-1.3) 		9.7
(3) 		7.3
(-2) 		7.1
(-2.4) 		7.9
(-0.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172330_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15882
Sequence Type Exemplar sequence
Representative Public ID C17B7.6 NCBI
Target Description C17B7.6 /REP_DB=WormBase Gene ID /WP=CE16854 /TR=O45154 /GB=AAC04400.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062283(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062283 NCBI Caenorhabditis elegans F53C3.9 (F53C3.9) mRNA, complete cds. 10/11 A 
F53C3.9 ENSEMBL cdna:known chromosome:CEL140:II:3885419:3886876:1 gene:F53C3.9 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061646 3/11 Cross Hyb Matching Probes A 
SNAP00000012190 4/11 Cross Hyb Matching Probes None
F58E1.1 3/11 Cross Hyb Matching Probes A 
ZK488.3 6/11 Cross Hyb Matching Probes None
ZK218.10 5/11 Cross Hyb Matching Probes None
F59A1.5 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F53C3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 0.0
blast T23706 hypothetical protein M04C7.2 - Caenorhabditis elegans 0.0
blast S42831 F40F12.2 protein - Caenorhabditis elegans 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.7E-81
Sequence
Target Sequence 
>C. ELEGANS:172330_X_AT
tatagacttcttaccggttcttcacatttctctaaattaactcagtttgtaaagttctct
aattccaataggaggcccatgattctggttaggaaagacacatgcacctctcatttcttt
gccaaatccattcctatttggaacaatcttgtcaaaaacattccggtatttctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGACTTCTTACCGGTTCTTCAC 653 659 25 Antisense
CGGTTCTTCACATTTCTCTAAATTA 406 243 39 Antisense
ATTTCTCTAAATTAACTCAGTTTGT 238 17 50 Antisense
CAGTTTGTAAAGTTCTCTAATTCCA 682 137 67 Antisense
AATTCCAATAGGAGGCCCATGATTC 676 177 85 Antisense
GGAGGCCCATGATTCTGGTTAGGAA 508 495 95 Antisense
TAGGAAAGACACATGCACCTCTCAT 576 653 114 Antisense
CCTCTCATTTCTTTGCCAAATCCAT 32 269 131 Antisense
TTCTTTGCCAAATCCATTCCTATTT 356 689 139 Antisense
TTCCTATTTGGAACAATCTTGTCAA 626 699 155 Antisense
TCAAAAACATTCCGGTATTTCTCTC 634 627 176 Antisense
Sequence Source Affymetrix Proprietary Database