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[172329_x_at]

Description F31A9.6 /REP_DB=WormBase Gene ID /WP=CE07166 /TR=Q19923 /GB=AAB00604.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 598
1 2 3 4 range
A 13.7
(-3)
A 		39.2
(-2.2)
A 		15.6
(-2.9)
A 		200
(3)
A 		186
B 91.9
(0.2)
A 		72.9
(-0.7)
A 		20.8
(-3)
A 		155.9
(3)
A 		135
C 87.8
(-2.2)
A 		19.4
(-2.9)
A 		10.3
(-3)
A 		608.7
(3)
P 		598
avr 64.5
(-2) 		43.8
(-2.4) 		15.6
(-3) 		321.5
(3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 56
(0.9)
A 		30.7
(-3)
A 		69.8
(3)
A 		68.7
(2.8)
A 		46.5
(-0.6)
A 		36
(-2.2)
A 		39
B 16.1
(-1.6)
A 		36.4
(2.2)
A 		14.1
(-2)
A 		20.2
(-0.8)
A 		40.4
(3)
A 		8.9
(-3)
A 		32
C 9.1
(-3)
A 		74.7
(3)
A 		43.8
(0.2)
A 		15.6
(-2.4)
A 		8.7
(-3)
A 		11
(-2.8)
A 		66
avr 27.1
(-1.2) 		47.3
(3) 		42.6
(2) 		34.8
(0.4) 		31.9
(-0.2) 		18.6
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 5
(-2.8)
A 		8.5
(-2)
A 		4.1
(-3)
A 		29.3
(3)
A 		25
B 29.3
(2.2)
A 		18
(-0.2)
A 		4.8
(-3)
A 		33.2
(3)
A 		28
C 29.1
(-1.5)
A 		5.6
(-2.9)
A 		3.6
(-3)
A 		102.6
(3)
P 		99
avr 21.1
(-1) 		10.7
(-2.2) 		4.2
(-3) 		55
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.3
(-2)
A 		10.9
(-1.5)
A 		15.2
(1.5)
A 		17.4
(3)
A 		14
(0.6)
A 		8.8
(-3)
A 		9
B 5.6
(-1.9)
A 		12.1
(1)
A 		3.4
(-3)
A 		5.3
(-2.1)
A 		16.4
(3)
A 		3.3
(-3)
A 		13
C 3.4
(-2.8)
A 		22.8
(3)
A 		11.1
(-0.5)
A 		3.1
(-2.9)
A 		2.8
(-3)
A 		3.7
(-2.7)
A 		20
avr 6.4
(-2.3) 		15.3
(3) 		9.9
(-0.2) 		8.6
(-1) 		11.1
(0.5) 		5.3
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172329_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18336
Sequence Type Exemplar sequence
Representative Public ID F31A9.6 NCBI
Target Description F31A9.6 /REP_DB=WormBase Gene ID /WP=CE07166 /TR=Q19923 /GB=AAB00604.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075927 NCBI Caenorhabditis elegans F31A9.6 (F31A9.6) mRNA, complete cds. 11/11 None
F31A9.6 ENSEMBL cdna:known chromosome:CEL140:X:1789007:1790083:-1 gene:F31A9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063332 1/11 Cross Hyb Matching Probes A 
NM_072761 7/11 Cross Hyb Matching Probes A 
NM_058704 1/11 Cross Hyb Matching Probes A 
NM_058536 8/11 Cross Hyb Matching Probes A 
NM_062489 7/11 Cross Hyb Matching Probes A 
NM_067826 7/11 Cross Hyb Matching Probes A 
NM_062865 6/11 Cross Hyb Matching Probes A 
NM_069210 5/11 Cross Hyb Matching Probes A 
NM_072760 7/11 Cross Hyb Matching Probes None
SNAP00000001197 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035332 1/11 Cross Hyb Matching Probes None
SNAP00000032522 6/11 Cross Hyb Matching Probes None
SNAP00000018816 7/11 Cross Hyb Matching Probes None
GENEFINDER00000018837 7/11 Cross Hyb Matching Probes None
Y37E3.18 8/11 Cross Hyb Matching Probes A 
K09H9.4 1/11 Cross Hyb Matching Probes A 
R05F9.4 7/11 Cross Hyb Matching Probes A 
C29F5.6 6/11 Cross Hyb Matching Probes A 
M110.6 1/11 Cross Hyb Matching Probes A 
Y69A2AR.10 7/11 Cross Hyb Matching Probes A 
Y11D7A.6 5/11 Cross Hyb Matching Probes A 
F38E1.2 7/11 Cross Hyb Matching Probes A 
F38E1.1 3/11 Cross Hyb Matching Probes None
F52E1.12 7/11 Cross Hyb Matching Probes A 
Y113G7A.2 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4897266-4898342(+) 96.66 96.66
chrV:8384472-8385541(+) 96.29 96.29
chrV:20041333-20042405(+) 95.08 95.08
chrIV:2590150-2591226(+) 96.84 96.84
chrI:2130471-2131547(-) 96.84 96.84
chrII:6301810-6302725(-) 81.99 81.99
chrX:1789006-1790083(-) 100.0 100.0
Public Domain and Genome References
Ensembl F31A9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00604 Hypothetical protein F31A9.6 [Caenorhabditis elegans] ref|NP_508328.1| F31A9.6 [Caenorhabditis elegans] 0.0
blast NP_494890 R05F9.4 [Caenorhabditis elegans] gb|AAA83167.1| Hypothetical protein R05F9.4 [Caenorhabditis elegans] 0.0
blast NP_490937 Y37E3.18 [Caenorhabditis elegans] gb|AAK27868.1| Hypothetical protein Y37E3.18 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.2E-37
Sequence
Target Sequence 
>C. ELEGANS:172329_X_AT
taccacctagacggttaccctattgagcgaaaagctattaccagagaccttggattttta
atctctgaaaagctggatttctctgatcattggagaaaatgtatcaatctagctaaattt
caactggccaacatgttcaacaagtacagtacctccaataagaaactaatgattctctta
tacaaaactttcatccgccctcgtttagaatatggaacagtagtgtcttctccgacaaaa
aaatcggatgagaaaacaatagagtctgtacaaaacgcattcactaggcgcctttatagt
agaatcaataaaagatattttaatccaactgataaagattacaaaactgctatggaacgt
aacgaactattcgacctccaaaccttaagcacgagacgtaaaataattgacagaatccaa
gtaatcagaatgaataatggtaaagtagactttaaaaaatctgagttttttgagcaacaa
gagacccacactcgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCACCTAGACGGTTACCCTATTG 361 585 502 Antisense
GAGCGAAAAGCTATTACCAGAGACC 538 385 526 Antisense
AAGCTGGATTTCTCTGATCATTGGA 90 151 571 Antisense
ATTTCAACTGGCCAACATGTTCAAC 33 17 618 Antisense
CTTATACAAAACTTTCATCCGCCCT 442 221 678 Antisense
TCATCCGCCCTCGTTTAGAATATGG 611 621 692 Antisense
ATGGAACAGTAGTGTCTTCTCCGAC 564 51 713 Antisense
TAGAGTCTGTACAAAACGCATTCAC 284 653 761 Antisense
AACGCATTCACTAGGCGCCTTTATA 131 145 775 Antisense
TTCGACCTCCAAACCTTAAGCACGA 208 695 871 Antisense
GCAACAAGAGACCCACACTCGTTTT 527 317 975 Antisense
Sequence Source Affymetrix Proprietary Database