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[172328_x_at]

Description T11F9.14 /REP_DB=WormBase Gene ID /WP=CE06426 /TR=Q22403 /GB=CAA98534.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 43.8
(-2.2)
A 		89.1
(3)
A 		37
(-3)
A 		58.4
(-0.5)
P 		52
B 33.2
(-0.8)
A 		72.9
(3)
A 		35.1
(-0.6)
A 		9.6
(-3)
A 		63
C 35.3
(-1.3)
A 		57.8
(1.6)
A 		21.4
(-3)
A 		69.1
(3)
A 		48
avr 37.4
(-2.1) 		73.3
(3) 		31.2
(-3) 		45.7
(-0.9) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 100.8
(3)
M 		41.6
(-0.8)
A 		57.2
(0.2)
M 		51.7
(-0.1)
A 		56.3
(0.2)
P 		7.1
(-3)
A 		94
B 48.3
(0.8)
A 		63.3
(3)
A 		62.9
(2.9)
M 		22.3
(-3)
A 		50.5
(1.1)
P 		37.1
(-0.8)
A 		41
C 28.6
(-3)
A 		83.2
(3)
P 		41.7
(-1.6)
A 		60.1
(0.5)
A 		47.2
(-1)
A 		53
(-0.3)
A 		55
avr 59.2
(2.3) 		62.7
(3) 		53.9
(1.3) 		44.7
(-0.6) 		51.3
(0.7) 		32.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15.9
(1.1)
A 		19.3
(3)
A 		9.7
(-2.3)
A 		8.5
(-3)
P 		11
B 10.6
(0.2)
A 		18
(3)
A 		8.1
(-0.7)
A 		2.1
(-3)
A 		16
C 11.7
(-0.2)
A 		16.6
(3)
A 		7.4
(-3)
A 		11.6
(-0.3)
A 		9
avr 12.7
(-0) 		18
(3) 		8.4
(-2.4) 		7.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 18.6
(3)
M 		14.8
(1.7)
A 		12.5
(0.8)
M 		13.1
(1)
A 		17
(2.4)
P 		1.7
(-3)
A 		17
B 16.8
(1.3)
A 		21.1
(3)
A 		15.3
(0.7)
M 		5.9
(-3)
A 		20.5
(2.8)
P 		13.8
(0.1)
A 		15
C 10.6
(-3)
A 		25.4
(3)
P 		10.6
(-3)
A 		12.1
(-2.4)
A 		15.3
(-1.1)
A 		17.8
(-0.1)
A 		15
avr 15.3
(-0.1) 		20.4
(3) 		12.8
(-1.6) 		10.4
(-3) 		17.6
(1.3) 		11.1
(-2.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172328_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13889
Sequence Type Exemplar sequence
Representative Public ID T11F9.14 NCBI
Target Description T11F9.14 /REP_DB=WormBase Gene ID /WP=CE06426 /TR=Q22403 /GB=CAA98534.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073510 NCBI Caenorhabditis elegans T11F9.14 (T11F9.14) mRNA, complete cds. 11/11 None
T11F9.14 ENSEMBL cdna:known chromosome:CEL140:V:11483285:11483422:-1 gene:T11F9.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076757 6/11 Cross Hyb Matching Probes A 
NM_065053 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000016686 1/11 Cross Hyb Matching Probes None
SNAP00000013925 7/11 Cross Hyb Matching Probes None
Y46E12A.2 1/11 Cross Hyb Matching Probes A 
C53B7.6 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6868583-6868721(-) 98.55 98.55
chrV:11483284-11483422(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F9.14
Entrez Gene 188429 Entrez gene
SwissProt Q22403 EMBL-EBI
WormBase CE06426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98534 Hypothetical protein T11F9.14 [Caenorhabditis elegans] ref|NP_505911.1| T11F9.14 [Caenorhabditis elegans] 2.0E-18
blast AAC48278 Hypothetical protein C53B7.6 [Caenorhabditis elegans] ref|NP_509158.1| C53B7.6 [Caenorhabditis elegans] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:172328_X_AT
atgtattatattgcttcagccgacagtcaacagagtcaacaaggcagatcacaggccgaa
gccccagagttcttgacagagaagtgcccattcgttggattgaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTATTATATTGCTTCAGCCGACA 47 49 13 Antisense
TATTGCTTCAGCCGACAGTCAACAG 357 665 21 Antisense
GCTTCAGCCGACAGTCAACAGAGTC 627 305 25 Antisense
CAGCCGACAGTCAACAGAGTCAACA 248 203 29 Antisense
GTCAACAGAGTCAACAAGGCAGATC 35 465 38 Antisense
CAAGGCAGATCACAGGCCGAAGCCC 13 183 52 Antisense
AAGCCCCAGAGTTCTTGACAGAGAA 575 149 71 Antisense
GAGTTCTTGACAGAGAAGTGCCCAT 528 397 79 Antisense
GACAGAGAAGTGCCCATTCGTTGGA 381 363 87 Antisense
GAGAAGTGCCCATTCGTTGGATTGA 549 391 91 Antisense
GTGCCCATTCGTTGGATTGAAGAGC 502 477 96 Antisense
Sequence Source Affymetrix Proprietary Database