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[172325_x_at]

Description C02E7.7 /REP_DB=WormBase Gene ID /WP=CE07844 /TR=O16427 /GB=AAC24166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 32      6grp_total > 10      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2926
1 2 3 4 range
A 74
(-3)
A 		2969.2
(3)
P 		2092.6
(1.2)
P 		310.2
(-2.5)
P 		2895
B 43
(-3)
A 		2427
(2.9)
P 		2452.4
(3)
P 		242
(-2.5)
P 		2409
C 63.2
(-3)
A 		2622
(3)
P 		1938
(1.4)
P 		215.3
(-2.6)
P 		2559
avr 60.1
(-3) 		2672.7
(3) 		2161
(1.8) 		255.8
(-2.6) 		2613

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2477
1 2 3 4 5 6 range
A 327.6
(-3)
P 		2617.2
(3)
P 		2026.8
(1.5)
P 		923.9
(-1.4)
P 		649.3
(-2.2)
P 		715.5
(-2)
P 		2290
B 354.7
(-3)
P 		2650.9
(3)
P 		1968.5
(1.2)
P 		810
(-1.8)
P 		882.7
(-1.6)
P 		836.5
(-1.7)
P 		2296
C 365.6
(-3)
P 		2804.7
(3)
P 		1200.3
(-0.9)
P 		811.2
(-1.9)
P 		853.7
(-1.8)
P 		799.6
(-1.9)
P 		2439
avr 349.3
(-3) 		2690.9
(3) 		1731.9
(0.5) 		848.4
(-1.7) 		795.2
(-1.9) 		783.9
(-1.9) 		2342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 26.9
(-3)
A 		644.5
(3)
P 		547
(2.1)
P 		45.4
(-2.8)
P 		618
B 13.7
(-3)
A 		599.4
(3)
P 		568.3
(2.7)
P 		51.6
(-2.6)
P 		586
C 20.9
(-3)
A 		753.8
(3)
P 		675.4
(2.4)
P 		36.3
(-2.9)
P 		733
avr 20.5
(-3) 		665.9
(3) 		596.9
(2.4) 		44.4
(-2.8) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 870
1 2 3 4 5 6 range
A 60.4
(-3)
P 		930.8
(3)
P 		441.4
(-0.4)
P 		234.3
(-1.8)
P 		195.9
(-2.1)
P 		174.2
(-2.2)
P 		870
B 123.4
(-3)
P 		882.4
(3)
P 		478
(-0.2)
P 		214.6
(-2.3)
P 		358.6
(-1.1)
P 		311.9
(-1.5)
P 		759
C 135.5
(-3)
P 		855.8
(3)
P 		305.5
(-1.6)
P 		163.1
(-2.8)
P 		276.3
(-1.8)
P 		267.7
(-1.9)
P 		720
avr 106.4
(-3) 		889.7
(3) 		408.3
(-0.7) 		204
(-2.3) 		276.9
(-1.7) 		251.3
(-1.9) 		783
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172325_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15018
Sequence Type Exemplar sequence
Representative Public ID C02E7.7 NCBI
Target Description C02E7.7 /REP_DB=WormBase Gene ID /WP=CE07844 /TR=O16427 /GB=AAC24166.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071918 NCBI Caenorhabditis elegans C02E7.7 (C02E7.7) mRNA, complete cds. 11/11 None
SNAP00000015181 ENSEMBL cdna:SNAP chromosome:CEL140:V:4918039:4918370:-1 11/11 None
GENEFINDER00000015193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4918039:4918370:-1 11/11 None
C02E7.7 ENSEMBL cdna:known chromosome:CEL140:V:4917598:4918399:-1 gene:C02E7.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040563 1/11 Cross Hyb Matching Probes None
SNAP00000043269 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043284 3/11 Cross Hyb Matching Probes None
F29D10.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4918038-4918370(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02E7.7
Entrez Gene 178884 Entrez gene
SwissProt O16427 EMBL-EBI
WormBase CE07844 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172325_X_AT
cttgttcccatccggaggaggtggtggatgcggatgtgccccaccaccaccaccaccagc
ctgcggatgcggaggaggtggcggcggatacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGTTCCCATCCGGAGGAGGTGGT 424 217 63 Antisense
GTTCCCATCCGGAGGAGGTGGTGGA 256 439 66 Antisense
GGAGGAGGTGGTGGATGCGGATGTG 105 517 76 Antisense
GGAGGTGGTGGATGCGGATGTGCCC 251 517 79 Antisense
GGTGGTGGATGCGGATGTGCCCCAC 156 499 82 Antisense
TGGTGGATGCGGATGTGCCCCACCA 548 553 84 Antisense
ACCAGCCTGCGGATGCGGAGGAGGT 496 85 117 Antisense
AGCCTGCGGATGCGGAGGAGGTGGC 351 79 120 Antisense
TGCGGATGCGGAGGAGGTGGCGGCG 169 583 124 Antisense
GCGGAGGAGGTGGCGGCGGATACGC 215 291 131 Antisense
CGGAGGAGGTGGCGGCGGATACGCT 533 241 132 Antisense
Sequence Source Affymetrix Proprietary Database