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[172324_x_at]

Description F42F12.7 /REP_DB=WormBase Gene ID /WP=CE03318 /TR=Q20342 /GB=CAA92171.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 85      4grp_highest_8_8 > 17      4grp_high_8_8 > 60      6grp_highest_nonorm > 29      6grp_total > 65      4grp_total > 59      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13191
1 2 3 4 range
A 8804
(0.7)
P 		9746.8
(1.1)
P 		13816.5
(3)
P 		916.7
(-3)
P 		12900
B 7285.7
(0.2)
P 		7208.2
(0.1)
P 		13304
(3)
P 		625.3
(-3)
P 		12679
C 6949.6
(0.5)
P 		9008.8
(1.7)
P 		11184.4
(3)
P 		972.9
(-3)
P 		10212
avr 7679.8
(0.4) 		8654.6
(0.9) 		12768.3
(3) 		838.3
(-3) 		11930

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16200
1 2 3 4 5 6 range
A 6980.5
(-3)
P 		7553.7
(-2.7)
P 		17135.7
(1.7)
P 		12508.3
(-0.4)
P 		11256.1
(-1)
P 		19968.7
(3)
P 		12988
B 6000.9
(-3)
P 		10395.3
(-0.8)
P 		14954.8
(1.5)
P 		12356.3
(0.2)
P 		10835.2
(-0.6)
P 		17847.6
(3)
P 		11847
C 3768.8
(-3)
P 		10376.3
(-0.4)
P 		12200.4
(0.3)
P 		13019
(0.7)
P 		10363.6
(-0.4)
P 		18874.2
(3)
P 		15105
avr 5583.4
(-3) 		9441.8
(-1.3) 		14763.6
(1.1) 		12627.9
(0.2) 		10818.3
(-0.6) 		18896.8
(3) 		13313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3765
1 2 3 4 range
A 3205.5
(2.3)
P 		2115.8
(0.4)
P 		3611.9
(3)
P 		134.2
(-3)
P 		3478
B 2323.3
(1.5)
P 		1780.3
(0.4)
P 		3082.8
(3)
P 		133.3
(-3)
P 		2950
C 2300.5
(0.4)
P 		2590.1
(0.9)
P 		3898.1
(3)
P 		164
(-3)
P 		3734
avr 2609.8
(1.4) 		2162.1
(0.6) 		3530.9
(3) 		143.8
(-3) 		3387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5369
1 2 3 4 5 6 range
A 1286.8
(-3)
P 		2686.5
(-0.7)
P 		3731.8
(1.1)
P 		3172.4
(0.2)
P 		3396.6
(0.5)
P 		4861.8
(3)
P 		3575
B 2088
(-3)
P 		3460.2
(-1.2)
P 		3631.5
(-1)
P 		3272.8
(-1.4)
P 		4402.2
(0)
P 		6655.3
(3)
P 		4567
C 1396.9
(-3)
P 		3166.1
(-0.8)
P 		3105.2
(-0.9)
P 		2618.1
(-1.5)
P 		3353.5
(-0.6)
P 		6318.3
(3)
P 		4921
avr 1590.6
(-3) 		3104.3
(-0.9) 		3489.5
(-0.4) 		3021.1
(-1) 		3717.4
(-0.1) 		5945.1
(3) 		4355
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172324_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17108
Sequence Type Exemplar sequence
Representative Public ID F42F12.7 NCBI
Target Description F42F12.7 /REP_DB=WormBase Gene ID /WP=CE03318 /TR=Q20342 /GB=CAA92171.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077672, NM_001029176, NM_182450, NM_001029486, NM_077673
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001336 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12356006:12361042:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029179 1/11 Cross Hyb Matching Probes None
NM_001029178 1/11 Cross Hyb Matching Probes None
NM_001029177 1/11 Cross Hyb Matching Probes None
NM_171744 2/11 Cross Hyb Matching Probes B 
NM_001029182 1/11 Cross Hyb Matching Probes None
NM_001029181 2/11 Cross Hyb Matching Probes None
NM_001029176 3/11 Cross Hyb Matching Probes None
NM_077672 5/11 Cross Hyb Matching Probes A B 
NM_077669 6/11 Cross Hyb Matching Probes B 
NM_182450 6/11 Cross Hyb Matching Probes B 
NM_001029486 8/11 Cross Hyb Matching Probes None
NM_182449 5/11 Cross Hyb Matching Probes B 
NM_077673 8/11 Cross Hyb Matching Probes B 
GENEFINDER00000001338 1/11 Cross Hyb Matching Probes None
SNAP00000001329 5/11 Cross Hyb Matching Probes None
SNAP00000001333 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026294 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026296 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026297 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026295 1/11 Cross Hyb Matching Probes None
C03G5.8 2/11 Cross Hyb Matching Probes None
C03G5.2 2/11 Cross Hyb Matching Probes None
F42F12.1 6/11 Cross Hyb Matching Probes None
F42F12.9 6/11 Cross Hyb Matching Probes B 
F42F12.10 8/11 Cross Hyb Matching Probes None
F42F12.6 5/11 Cross Hyb Matching Probes A B 
F42F12.7 5/11 Cross Hyb Matching Probes None
F42F12.8.2 8/11 Cross Hyb Matching Probes B 
F42F12.8.1 8/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12358714-12361042(+) 100.0 100.0
chrX:12343054-12343906(+) 96.75 96.75
chrX:12356307-12357779(+) 95.73 95.73
chrX:12356178-12357650(-) 99.59 99.59
chrX:12358585-12360913(-) 95.73 95.73
chrX:12342925-12343777(-) 95.12 95.12
chrX:8534662-8537265(-) 90.65 90.65
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60761 Hypothetical protein F42F12.10 [Caenorhabditis elegans] emb|CAD54144.1| Hypothetical protein F42F12.8 [Caenorhabditis elegans] ref|NP_510074.2| Nematode Specific Peptide family, group C family member (nspc-15) [Caenorhabditis elegans] ref|NP_001024657.1| Nematode Specific Peptide family, group C family member (nspc-12) [Caenorhabditis elegans] 3.0E-55
blast CAD54145 Hypothetical protein F42F12.9 [Caenorhabditis elegans] ref|NP_872250.1| Nematode Specific Peptide family, group C family member (nspc-10) [Caenorhabditis elegans] 4.0E-54
blast CAA92172 Hypothetical protein F42F12.6 [Caenorhabditis elegans] emb|CAA92171.2| Hypothetical protein F42F12.7 [Caenorhabditis elegans] ref|NP_510073.2| Nematode Specific Peptide family, group C family member (nspc-13) [Caenorhabditis elegans] ref|NP_872249.1| Nematode Specific Peptide family, group C family member (nspc-14) [Caenorhabditis elegans] 6.0E-53
Sequence
Target Sequence 
>C. ELEGANS:172324_X_AT
gaatgcgtaagattcgccaccattgacaccagcacagaactcttgacagagttgcaaggt
gatggagctgatggcagaaacaaggcagagggcaacgagggtgcgaaggaactgcaagga
tattcattccttcgcaccctcgttgccctttgccttgtttctgccatcagctccatcacc
ttgcaactctgtcaagagttctgtgctggtgtcaatggtggtgaatcttacgcattctgc
tctccatggatcagttttgccactcacagaaacaagacttgctacaatctctgtgttcat
aactgtgctgctgtctatgatggttcctgcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGTAAGATTCGCCACCATTG 381 331 76 Antisense
TTGACACCAGCACAGAACTCTTGAC 340 703 98 Antisense
CAAGGATATTCATTCCTTCGCACCC 540 183 190 Antisense
TCCATCACCTTGCAACTCTGTCAAG 387 591 247 Antisense
GTCAAGAGTTCTGTGCTGGTGTCAA 398 463 266 Antisense
GTGGTGAATCTTACGCATTCTGCTC 560 489 293 Antisense
CATTCTGCTCTCCATGGATCAGTTT 370 217 308 Antisense
ATGGATCAGTTTTGCCACTCACAGA 702 51 321 Antisense
GACTTGCTACAATCTCTGTGTTCAT 574 371 351 Antisense
GTGTTCATAACTGTGCTGCTGTCTA 218 485 368 Antisense
TGCTGTCTATGATGGTTCCTGCACA 321 579 384 Antisense
Sequence Source Affymetrix Proprietary Database