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[172323_x_at]

Description C03A7.7 /REP_DB=WormBase Gene ID /WP=CE07865 /TR=O16501 /GB=AAB65996.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 58      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 64      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7533
1 2 3 4 range
A 94
(-3)
A 		7048.9
(3)
P 		6947.4
(2.9)
P 		131.1
(-3)
A 		6955
B 90.3
(-3)
A 		7587.6
(3)
P 		7442.5
(2.9)
P 		136.3
(-3)
A 		7497
C 55
(-3)
A 		7253
(3)
P 		6591.9
(2.4)
P 		114.4
(-3)
A 		7198
avr 79.8
(-3) 		7296.5
(3) 		6993.9
(2.7) 		127.3
(-3) 		7217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2379
1 2 3 4 5 6 range
A 1760.4
(-3)
P 		4139.3
(3)
P 		1913.7
(-2.6)
P 		2154.4
(-2)
P 		3390.6
(1.1)
P 		3323.9
(0.9)
P 		2379
B 2024.7
(-2.1)
P 		3344.8
(3)
P 		1795.1
(-3)
P 		2563.5
(-0)
P 		2768.7
(0.8)
P 		2831.7
(1)
P 		1550
C 1941.5
(-2.7)
P 		3165.7
(0.9)
P 		2369.2
(-1.4)
P 		1823.5
(-3)
P 		3895.5
(3)
P 		2268.3
(-1.7)
P 		2072
avr 1908.9
(-3) 		3549.9
(3) 		2026
(-2.6) 		2180.5
(-2) 		3351.6
(2.3) 		2808
(0.3) 		1641
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2279
1 2 3 4 range
A 34.2
(-2.9)
A 		1530.1
(2)
P 		1816.2
(3)
P 		19.2
(-3)
A 		1797
B 28.8
(-3)
A 		1874
(3)
P 		1724.6
(2.5)
P 		29
(-3)
A 		1845
C 18.2
(-3)
A 		2085.3
(2.4)
P 		2297.5
(3)
P 		19.3
(-3)
A 		2279
avr 27.1
(-3) 		1829.8
(2.6) 		1946.1
(3) 		22.5
(-3) 		1924

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1148
1 2 3 4 5 6 range
A 324.5
(-3)
P 		1472.1
(3)
P 		416.8
(-2.5)
P 		546.4
(-1.8)
P 		1023.1
(0.7)
P 		809.3
(-0.5)
P 		1148
B 704.5
(-0.7)
P 		1113.3
(2.9)
P 		435.9
(-3)
P 		679
(-0.9)
P 		1124.9
(3)
P 		1055.9
(2.4)
P 		689
C 719.6
(-0.6)
P 		966
(1)
P 		603
(-1.4)
P 		366.7
(-3)
P 		1260.5
(3)
P 		759.3
(-0.4)
P 		894
avr 582.9
(-2.2) 		1183.8
(3) 		485.2
(-3) 		530.7
(-2.6) 		1136.2
(2.6) 		874.8
(0.3) 		699
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172323_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14886
Sequence Type Exemplar sequence
Representative Public ID C03A7.7 NCBI
Target Description C03A7.7 /REP_DB=WormBase Gene ID /WP=CE07865 /TR=O16501 /GB=AAB65996.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071982 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-6) (abu-6) mRNA, complete cds. 11/11 None
SNAP00000035279 ENSEMBL cdna:SNAP chromosome:CEL140:V:5160491:5161705:-1 11/11 None
GENEFINDER00000035296 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5160491:5161705:-1 11/11 None
C03A7.7 ENSEMBL cdna:known chromosome:CEL140:V:5160484:5161705:-1 gene:C03A7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071992 8/11 Cross Hyb Matching Probes A 
NM_071981 6/11 Cross Hyb Matching Probes A 
NM_071983 6/11 Cross Hyb Matching Probes A 
NM_071022 1/11 Cross Hyb Matching Probes A 
SNAP00000025913 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025923 1/11 Cross Hyb Matching Probes None
SNAP00000035278 6/11 Cross Hyb Matching Probes None
SNAP00000035280 6/11 Cross Hyb Matching Probes None
SNAP00000035293 8/11 Cross Hyb Matching Probes None
GENEFINDER00000035294 8/11 Cross Hyb Matching Probes None
GENEFINDER00000035297 6/11 Cross Hyb Matching Probes None
GENEFINDER00000035298 6/11 Cross Hyb Matching Probes None
R09B5.5 1/11 Cross Hyb Matching Probes A 
C03A7.4 6/11 Cross Hyb Matching Probes A 
C03A7.8 6/11 Cross Hyb Matching Probes A 
C03A7.14 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5158435-5159649(+) 98.29 98.29
chrV:5160490-5161705(-) 100.0 100.0
chrV:5163207-5164571(-) 97.77 97.77
chrV:5192950-5194271(-) 90.06 91.52
Public Domain and Genome References
Gene Title
Gene Symbol abu-6
Ensembl C03A7.7
Entrez Gene 178903 Entrez gene
SwissProt O16501 EMBL-EBI
WormBase CE07865 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65996 Activated in blocked unfolded protein response protein 6 [Caenorhabditis elegans] ref|NP_504383.1| Activated in Blocked Unfolded protein response family member (abu-6) [Caenorhabditis elegans] 6.0E-21
blast AAB66001 Prion-like-(q/n-rich)-domain-bearing protein protein 5 [Caenorhabditis elegans] ref|NP_504382.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-5) [Caenorhabditis elegans] 7.0E-20
blast AAB65995 Activated in blocked unfolded protein response protein 7 [Caenorhabditis elegans] ref|NP_504384.1| Activated in Blocked Unfolded protein response family member (abu-7) [Caenorhabditis elegans] 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 5.8E-35
Sequence
Target Sequence 
>C. ELEGANS:172323_X_AT
tcaagctcaatgccaaccacagtgccagcaacaatgccaatcttcatgtgtccagcaaca
gcaacagtccaaccagtgcgagccagcttgcaacactcaatgctctgatatctgccaaca
aactgctcaggctacccaacaagtctacaaccagaacatgaaccagaacaccaacaccca
aatgtacaacccatacaataccaacaccagccagaacgctaactgcgctccagcttgcca
accagcctgtgacaactcctgcacttcccagcagactcaaccaatgtaccaacaatacga
caccaccactgaagctccagctcaagtcatccagattgttctccagacttctgttgctca
atcatcccaatgtgctccacaatgcgaacagtcctgccaacagcaatgtgttcaacaaca
acagccagctgcccagtgccaaactgcctgccaatcatcatgctctaactcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGCTCAATGCCAACCACAGTGC 552 631 591 Antisense
CAATGCCAATCTTCATGTGTCCAGC 533 181 622 Antisense
GTCCAGCAACAGCAACAGTCCAACC 433 477 640 Antisense
GCCAGCTTGCAACACTCAATGCTCT 489 279 672 Antisense
TCAGGCTACCCAACAAGTCTACAAC 397 621 717 Antisense
ACCAGCCAGAACGCTAACTGCGCTC 649 85 796 Antisense
TTCCCAGCAGACTCAACCAATGTAC 16 699 855 Antisense
TCATCCAGATTGTTCTCCAGACTTC 698 621 917 Antisense
TCCAGACTTCTGTTGCTCAATCATC 39 591 932 Antisense
TCCACAATGCGAACAGTCCTGCCAA 147 589 966 Antisense
CCAATCATCATGCTCTAACTCCTGC 488 277 1041 Antisense
Sequence Source Affymetrix Proprietary Database