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[172322_x_at]

Description Y43F8B.6 /REP_DB=WormBase Gene ID /WP=CE21891 /TR=Q9XWX9 /GB=CAA21507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 01      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 43.8
(-1.5)
A 		31.3
(-3)
A 		54
(-0.4)
A 		82.7
(3)
A 		51
B 62.5
(0.9)
A 		51.8
(-3)
A 		65.1
(1.8)
A 		68.3
(3)
A 		17
C 32.9
(-2.8)
A 		46.4
(-1.8)
A 		30.2
(-3)
A 		109.8
(3)
P 		80
avr 46.4
(-2.6) 		43.2
(-3) 		49.8
(-2.1) 		86.9
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 27.5
(2.8)
A 		12.3
(-0.7)
A 		7.2
(-1.9)
A 		21.4
(1.4)
A 		2.3
(-3)
A 		28.5
(3)
A 		26
B 22.9
(2.1)
A 		23.1
(2.1)
A 		25.6
(2.8)
A 		26.4
(3)
A 		19.9
(1.3)
A 		3.4
(-3)
A 		23
C 50.6
(3)
A 		45
(2.2)
A 		31.7
(0.3)
A 		7.9
(-3)
A 		8.9
(-2.9)
A 		10
(-2.7)
A 		43
avr 33.7
(3) 		26.8
(1.2) 		21.5
(-0.1) 		18.6
(-0.9) 		10.4
(-3) 		14
(-2.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.9
(3)
A 		6.8
(-3)
A 		14.1
(1.8)
A 		12.1
(0.5)
A 		9
B 19.9
(3)
A 		12.8
(-3)
A 		15.1
(-1.1)
A 		14.6
(-1.5)
A 		7
C 10.9
(-2.7)
A 		13.4
(-0.8)
A 		10.5
(-3)
A 		18.5
(3)
P 		8
avr 15.6
(3) 		11
(-3) 		13.2
(-0.1) 		15.1
(2.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.1
(1.3)
A 		4.4
(0.6)
A 		1.6
(-2.1)
A 		5.4
(1.5)
A 		0.7
(-3)
A 		6.9
(3)
A 		6
B 8
(2.9)
A 		7.7
(2.6)
A 		6.2
(1.3)
A 		7
(2)
A 		8.1
(3)
A 		1.3
(-3)
A 		7
C 18.8
(3)
A 		13.7
(1.2)
A 		8.1
(-0.7)
A 		1.6
(-3)
A 		2.9
(-2.5)
A 		3.3
(-2.4)
A 		17
avr 10.6
(3) 		8.6
(1.2) 		5.3
(-1.7) 		4.7
(-2.2) 		3.9
(-2.9) 		3.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172322_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13302
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.6 NCBI
Target Description Y43F8B.6 /REP_DB=WormBase Gene ID /WP=CE21891 /TR=Q9XWX9 /GB=CAA21507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075391 NCBI Caenorhabditis elegans Y43F8B.6 (Y43F8B.6) mRNA, complete cds. 11/11 None
GENEFINDER00000027193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19494620:19497229:1 11/11 None
Y43F8B.6 ENSEMBL cdna:known chromosome:CEL140:V:19494716:19497229:1 gene:Y43F8B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19494715-19497229(+) 98.96 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.6
Entrez Gene 189871 Entrez gene
SwissProt Q9XWX9 EMBL-EBI
WormBase CE21891 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21507 Hypothetical protein Y43F8B.6 [Caenorhabditis elegans] ref|NP_507792.1| Y43F8B.6 [Caenorhabditis elegans] 1.0E-29
blast CAA21507 Hypothetical protein Y43F8B.6 [Caenorhabditis elegans] ref|NP_507792.1| Y43F8B.6 [Caenorhabditis elegans] 5.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172322_X_AT
gctcgagggactggcaaaaactaagtgccaacgcaaggtacttctcctaaggacaagtgg
ctggaggaaaacagatttgacgtcaggccgcacgaaacctgatgaaaaaagcaacaagtt
ggctcaacttgctcaaaatgtccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCGAGGGACTGGCAAAAACTAAG 641 297 15 Antisense
AGTGCCAACGCAAGGTACTTCTCCT 535 59 38 Antisense
ACGCAAGGTACTTCTCCTAAGGACA 470 83 45 Antisense
GGTACTTCTCCTAAGGACAAGTGGC 459 503 51 Antisense
TAAGGACAAGTGGCTGGAGGAAAAC 530 635 62 Antisense
AAACAGATTTGACGTCAGGCCGCAC 531 127 83 Antisense
AGATTTGACGTCAGGCCGCACGAAA 12 3 87 Antisense
GACGTCAGGCCGCACGAAACCTGAT 252 313 93 Antisense
CAGGCCGCACGAAACCTGATGAAAA 575 207 98 Antisense
AGCAACAAGTTGGCTCAACTTGCTC 611 75 124 Antisense
GGCTCAACTTGCTCAAAATGTCCAA 673 537 135 Antisense
Sequence Source Affymetrix Proprietary Database