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[172321_x_at]

Description C03A7.8 /REP_DB=WormBase Gene ID /WP=CE07866 /TR=O16502 /GB=AAB65995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 99      6grp_highest_nonorm > 68      6grp_total > 79      4grp_total > 49      6grp_cgc > 89      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5983
1 2 3 4 range
A 36.3
(-3)
A 		5918.7
(3)
P 		5631.9
(2.7)
P 		12
(-3)
A 		5907
B 19.7
(-3)
A 		5050.5
(2.1)
P 		5995.2
(3)
P 		38.4
(-3)
A 		5976
C 107.8
(-2.9)
A 		4884.2
(2.7)
P 		5179.9
(3)
P 		15.4
(-3)
A 		5165
avr 54.6
(-3) 		5284.5
(2.7) 		5602.3
(3) 		21.9
(-3) 		5580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2071
1 2 3 4 5 6 range
A 1478.4
(-2.5)
P 		3263.5
(3)
P 		1325.8
(-3)
P 		1741.2
(-1.7)
P 		2763.8
(1.5)
P 		3074.3
(2.4)
P 		1938
B 1371.2
(-3)
P 		2545.3
(3)
P 		1423.8
(-2.7)
P 		2010.6
(0.3)
P 		2228.5
(1.4)
P 		2224.5
(1.4)
P 		1174
C 1559.5
(-2.6)
P 		2325.3
(-0.2)
P 		1646.9
(-2.3)
P 		1412.7
(-3)
P 		3397.1
(3)
P 		2142.4
(-0.8)
P 		1984
avr 1469.7
(-3) 		2711.4
(2.6) 		1465.5
(-3) 		1721.5
(-1.8) 		2796.5
(3) 		2480.4
(1.6) 		1331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1804
1 2 3 4 range
A 13.2
(-3)
A 		1284.8
(2.2)
P 		1472.3
(3)
P 		1.8
(-3)
A 		1471
B 6.3
(-3)
A 		1247.3
(2.4)
P 		1389.2
(3)
P 		8.2
(-3)
A 		1383
C 35.7
(-2.9)
A 		1404.2
(1.7)
P 		1805.4
(3)
P 		2.6
(-3)
A 		1803
avr 18.4
(-2.9) 		1312.1
(2.1) 		1555.6
(3) 		4.2
(-3) 		1551

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 272.5
(-3)
P 		1160.7
(3)
P 		288.7
(-2.9)
P 		441.6
(-1.9)
P 		834
(0.8)
P 		748.5
(0.2)
P 		888
B 477.1
(-1.6)
P 		847.2
(2.4)
P 		345.7
(-3)
P 		532.5
(-1)
P 		905.4
(3)
P 		829.5
(2.2)
P 		560
C 578.1
(-0.8)
P 		709.5
(0.1)
P 		419.2
(-2)
P 		284.1
(-3)
P 		1099.3
(3)
P 		717.2
(0.2)
P 		815
avr 442.6
(-2.1) 		905.8
(2.6) 		351.2
(-3) 		419.4
(-2.3) 		946.2
(3) 		765.1
(1.2) 		595
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172321_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15002
Sequence Type Exemplar sequence
Representative Public ID C03A7.8 NCBI
Target Description C03A7.8 /REP_DB=WormBase Gene ID /WP=CE07866 /TR=O16502 /GB=AAB65995.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071992(9), NM_071983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071992 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-8) (abu-8) mRNA, complete cds. 9/11 A 
NM_071983 NCBI Caenorhabditis elegans Activated in Blocked Unfolded protein response family member (abu-7) (abu-7) mRNA, complete cds. 11/11 None
SNAP00000035280 ENSEMBL cdna:SNAP chromosome:CEL140:V:5163208:5164571:-1 11/11 None
SNAP00000035293 ENSEMBL cdna:SNAP chromosome:CEL140:V:5192951:5194379:-1 9/11 None
GENEFINDER00000035294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5192951:5194379:-1 9/11 None
GENEFINDER00000035297 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5163208:5164571:-1 11/11 None
C03A7.8 ENSEMBL cdna:known chromosome:CEL140:V:5163208:5164571:-1 gene:C03A7.8 11/11 None
C03A7.14 ENSEMBL cdna:known chromosome:CEL140:V:5192828:5194420:-1 gene:C03A7.14 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071982 7/11 Cross Hyb Matching Probes A 
NM_071981 4/11 Cross Hyb Matching Probes A 
SNAP00000035278 4/11 Cross Hyb Matching Probes None
SNAP00000035279 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035296 7/11 Cross Hyb Matching Probes None
GENEFINDER00000035298 4/11 Cross Hyb Matching Probes None
C03A7.4 4/11 Cross Hyb Matching Probes A 
C03A7.7 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5158435-5159324(+) 62.41 62.41
chrV:5163207-5164571(-) 100.0 100.0
chrV:5192950-5194271(-) 91.5 92.86
Public Domain and Genome References
Gene Title

Gene Symbol abu-8
abu-7
Ensembl C03A7.8
C03A7.14
Entrez Gene 178904 Entrez gene
182139 Entrez gene
SwissProt O16511 EMBL-EBI
O16502 EMBL-EBI
WormBase CE07872 Wormbase
CE07866 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66007 Activated in blocked unfolded protein response protein 8 [Caenorhabditis elegans] ref|NP_504393.1| Activated in Blocked Unfolded protein response family member (abu-8) [Caenorhabditis elegans] 5.0E-49
blast AAB65995 Activated in blocked unfolded protein response protein 7 [Caenorhabditis elegans] ref|NP_504384.1| Activated in Blocked Unfolded protein response family member (abu-7) [Caenorhabditis elegans] 1.0E-46
blast AAB65995 Activated in blocked unfolded protein response protein 7 [Caenorhabditis elegans] ref|NP_504384.1| Activated in Blocked Unfolded protein response family member (abu-7) [Caenorhabditis elegans] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 4.2E-35
Pfam IPR009475 EMBL-EBI Protein of unknown function DUF1096 3.1E-33
Sequence
Target Sequence 
>C. ELEGANS:172321_X_AT
tcaggctacccaacaagtctacaaccagaacatgaaccagaacaccaacacccaaatgta
caacccatacaataccaacaccaaccagaacgctaactgcgctccagcttgccaaccagc
ctgcgacaactcctgcacatcccaacaggcccagccagtgtaccaacaagcccagccaac
ttaccaagtccagcaaaccactgccgctccaatgtacgatccatacaacaaccaaggatc
tgccaactgcgctccagcttgccaaccagcttgtgacaactcctgcacatcccagcagac
tcaaccaatgtaccaaccatacgacaccaccactgaagctccagctcaagtcatccagat
tgttctccagacttctgttgctcaatcatcccaatgtgctccacaatgcgaacagtcctg
ccaacagcaatgtgttcagcaacaacagccagctgctcagtgccaaactgcctgccaatc
atcatgctctaactcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGCTACCCAACAAGTCTACAAC 398 621 717 Antisense
ACAACCAAGGATCTGCCAACTGCGC 573 111 944 Antisense
GCTTGCCAACCAGCTTGTGACAACT 682 305 973 Antisense
GCAGACTCAACCAATGTACCAACCA 466 309 1011 Antisense
CACCACTGAAGCTCCAGCTCAAGTC 533 201 1044 Antisense
TCATCCAGATTGTTCTCCAGACTTC 699 621 1067 Antisense
TCCAGACTTCTGTTGCTCAATCATC 40 591 1082 Antisense
ATCATCCCAATGTGCTCCACAATGC 636 29 1101 Antisense
TCCACAATGCGAACAGTCCTGCCAA 148 589 1116 Antisense
GCAACAACAGCCAGCTGCTCAGTGC 220 319 1155 Antisense
CCAATCATCATGCTCTAACTCCTGC 489 277 1191 Antisense
Sequence Source Affymetrix Proprietary Database