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[172319_x_at]

Description F02C12.3 /REP_DB=WormBase Gene ID /WP=CE23626 /TR=Q19109 /GB=CAA91020.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 16      4grp_total > 13      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 34.1
(0.5)
A 		5.9
(-2.9)
A 		5.3
(-3)
A 		54.3
(3)
A 		49
B 2.4
(-3)
A 		8
(-2.2)
A 		3.4
(-2.9)
A 		46.9
(3)
A 		45
C 64
(2.3)
A 		5.7
(-3)
A 		6.3
(-2.9)
A 		72.3
(3)
P 		67
avr 33.5
(0.2) 		6.5
(-2.8) 		5
(-3) 		57.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 8.4
(3)
A 		7.2
(1.4)
A 		5.8
(-0.4)
A 		4.7
(-1.8)
A 		4.4
(-2.2)
A 		3.8
(-3)
A 		5
B 42.7
(3)
A 		38.1
(2.3)
A 		7.5
(-2.4)
A 		3.8
(-3)
A 		5.6
(-2.7)
A 		4.5
(-2.9)
A 		39
C 5.7
(0.8)
A 		8
(3)
A 		1.6
(-3)
A 		3.2
(-1.5)
A 		4.3
(-0.5)
A 		4
(-0.8)
A 		6
avr 18.9
(3) 		17.8
(2.6) 		5
(-2.6) 		3.9
(-3) 		4.8
(-2.6) 		4.1
(-2.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.4
(3)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		8
(0.6)
A 		11
B 0.8
(-3)
A 		2
(-2.2)
A 		0.8
(-3)
A 		10
(3)
A 		9
C 21.2
(3)
A 		1.6
(-3)
A 		2.2
(-2.8)
A 		12.2
(0.2)
P 		20
avr 11.5
(3) 		1.6
(-2.9) 		1.5
(-3) 		10.1
(2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.5
(-0.9)
A 		2.6
(3)
A 		1.3
(-1.6)
A 		1.2
(-1.9)
A 		1.3
(-1.6)
A 		0.9
(-3)
A 		2
B 14.8
(3)
A 		12.7
(2.1)
A 		1.8
(-2.7)
A 		1
(-3)
A 		2.3
(-2.4)
A 		1.7
(-2.7)
A 		14
C 2.1
(2.1)
A 		2.4
(3)
A 		0.4
(-3)
A 		0.6
(-2.4)
A 		1.4
(-0)
A 		1.4
(-0)
A 		2
avr 6.1
(3) 		5.9
(2.8) 		1.2
(-2.7) 		0.9
(-3) 		1.7
(-2.1) 		1.3
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172319_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17903
Sequence Type Exemplar sequence
Representative Public ID F02C12.3 NCBI
Target Description F02C12.3 /REP_DB=WormBase Gene ID /WP=CE23626 /TR=Q19109 /GB=CAA91020.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077827 NCBI Caenorhabditis elegans F02C12.3 (F02C12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000017014 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13396616:13397602:1 11/11 None
SNAP00000017010 ENSEMBL cdna:SNAP chromosome:CEL140:X:13397389:13397792:1 11/11 None
F02C12.3 ENSEMBL cdna:known chromosome:CEL140:X:13396947:13397632:1 gene:F02C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13397388-13397549(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02C12.3
Entrez Gene 181460 Entrez gene
SwissProt Q19109 EMBL-EBI
WormBase CE23626 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91020 Hypothetical protein F02C12.3 [Caenorhabditis elegans] ref|NP_510228.1| F02C12.3 [Caenorhabditis elegans] 3.0E-15
blast CAA91020 Hypothetical protein F02C12.3 [Caenorhabditis elegans] ref|NP_510228.1| F02C12.3 [Caenorhabditis elegans] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172319_X_AT
atgtgcccatcggtgcaaatggatatggtcagatcacgagcagaagctcaagtggagaaa
tggtcgggaaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCCCATCGGTGCAAATGGATA 388 49 13 Antisense
GTGCCCATCGGTGCAAATGGATATG 323 479 15 Antisense
GGTGCAAATGGATATGGTCAGATCA 447 501 24 Antisense
AATGGATATGGTCAGATCACGAGCA 320 163 30 Antisense
GGATATGGTCAGATCACGAGCAGAA 212 511 33 Antisense
ATATGGTCAGATCACGAGCAGAAGC 376 17 35 Antisense
ATGGTCAGATCACGAGCAGAAGCTC 298 51 37 Antisense
GTCAGATCACGAGCAGAAGCTCAAG 586 465 40 Antisense
GATCACGAGCAGAAGCTCAAGTGGA 418 421 44 Antisense
GCTCAAGTGGAGAAATGGTCGGGAA 296 301 58 Antisense
CAAGTGGAGAAATGGTCGGGAAGGG 10 155 61 Antisense
Sequence Source Affymetrix Proprietary Database