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[172317_x_at]

Description Y67A6A.1 /REP_DB=WormBase Gene ID /WP=CE20349 /TR=Q9XWJ2 /GB=CAA21674.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 1.6
(-3)
A 		7.9
(3)
A 		1.8
(-2.8)
A 		1.9
(-2.7)
A 		6
B 24.3
(0.5)
A 		38.9
(3)
A 		3.9
(-3)
A 		19.8
(-0.3)
A 		35
C 7.1
(-2.5)
A 		20.6
(3)
A 		5.8
(-3)
A 		18.7
(2.2)
A 		15
avr 11
(-0.7) 		22.5
(3) 		3.8
(-3) 		13.5
(0.1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 8.4
(-2.1)
A 		1
(-3)
A 		28.1
(0.2)
A 		15.1
(-1.3)
A 		29.7
(0.4)
A 		52.1
(3)
A 		51
B 1.2
(-2.9)
A 		7.7
(-2.2)
A 		0.6
(-3)
A 		26.3
(-0.1)
P 		53.5
(3)
M 		47.1
(2.3)
M 		53
C 10.1
(-2.1)
A 		15.4
(-1.4)
A 		2.7
(-3)
A 		15.6
(-1.4)
A 		29.6
(0.3)
P 		50.9
(3)
P 		48
avr 6.6
(-3) 		8
(-2.8) 		10.5
(-2.5) 		19
(-1.3) 		37.6
(1.3) 		50
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-1.7)
A 		1.7
(3)
A 		0.5
(-2.1)
A 		0.3
(-3)
A 		1
B 7.8
(1.8)
A 		9.6
(3)
A 		0.9
(-3)
A 		4.2
(-0.7)
A 		9
C 2.4
(-2.4)
A 		5.9
(3)
A 		2
(-3)
A 		3.2
(-1.2)
A 		4
avr 3.6
(0.3) 		5.7
(3) 		1.1
(-3) 		2.6
(-1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		0.3
(-3)
A 		6.1
(-0.2)
A 		3.8
(-1.3)
A 		9
(1.2)
A 		12.7
(3)
A 		12
B 0.4
(-2.9)
A 		2.6
(-2.3)
A 		0.2
(-3)
A 		7
(-1.1)
P 		21.7
(3)
M 		17.6
(1.9)
M 		22
C 3.8
(-1.9)
A 		4.7
(-1.5)
A 		0.7
(-3)
A 		3.1
(-2.1)
A 		9.6
(0.3)
P 		17
(3)
P 		16
avr 1.9
(-3) 		2.5
(-2.7) 		2.3
(-2.8) 		4.6
(-1.8) 		13.4
(2) 		15.8
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172317_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1347
Sequence Type Exemplar sequence
Representative Public ID Y67A6A.1 NCBI
Target Description Y67A6A.1 /REP_DB=WormBase Gene ID /WP=CE20349 /TR=Q9XWJ2 /GB=CAA21674.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060205 NCBI Caenorhabditis elegans Y67A6A.1 (Y67A6A.1) mRNA, complete cds. 11/11 None
SNAP00000002756 ENSEMBL cdna:SNAP chromosome:CEL140:I:9837948:9838383:-1 11/11 None
GENEFINDER00000002761 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9837948:9838383:-1 11/11 None
Y67A6A.1 ENSEMBL cdna:known chromosome:CEL140:I:9837948:9838383:-1 gene:Y67A6A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059307 2/11 Cross Hyb Matching Probes A 
SNAP00000014376 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014387 2/11 Cross Hyb Matching Probes None
C34G6.3 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9837878-9838314(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A6A.1
Entrez Gene 172835 Entrez gene
SwissProt Q9XWJ2 EMBL-EBI
WormBase CE20349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21674 Hypothetical protein Y67A6A.1 [Caenorhabditis elegans] ref|NP_492606.1| Y67A6A.1 [Caenorhabditis elegans] 3.0E-28
blast AAB52477 Hypothetical protein C34G6.3 [Caenorhabditis elegans] ref|NP_491708.1| C34G6.3 [Caenorhabditis elegans] 7.0E-26
blast CAE57484 Hypothetical protein CBG00453 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:172317_X_AT
gaaagacggcgttgacaagaagaaaacttcgaaaacgaagaagaagtcaaatttgtcgat
ttccaaatcgcaaacttcggtggatatgaatgaaaaggacaaatcaaaggaggcaaagga
agcaaaggagttgaaagagaagaaggcaaaagaggaagccgagaagaaggttgttgccac
accaaaaaaagatgcttcgaaggatcaggcaaagaaggaggaagatcctaataagcaaaa
cgaaccaagtggaatggatgttcttgtgaaggaggacggcaagaagacaaaaatggacga
tggctacgaggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGACGGCGTTGACAAGAAGAAA 5 351 42 Antisense
AGAAGTCAAATTTGTCGATTTCCAA 426 71 83 Antisense
GATTTCCAAATCGCAAACTTCGGTG 237 427 99 Antisense
AAATCGCAAACTTCGGTGGATATGA 351 117 106 Antisense
GCCGAGAAGAAGGTTGTTGCCACAC 324 285 199 Antisense
TTGCCACACCAAAAAAAGATGCTTC 573 701 215 Antisense
GATGCTTCGAAGGATCAGGCAAAGA 142 413 232 Antisense
GATCCTAATAAGCAAAACGAACCAA 199 389 265 Antisense
GGATGTTCTTGTGAAGGAGGACGGC 227 513 297 Antisense
GAAGGAGGACGGCAAGAAGACAAAA 69 333 309 Antisense
AAAAATGGACGATGGCTACGAGGAT 451 129 330 Antisense
Sequence Source Affymetrix Proprietary Database