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[172316_x_at]

Description W02D7.9 /REP_DB=WormBase Gene ID /WP=CE14452 /TR=O17531 /GB=AAB63938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 6.3
(-1.8)
A 		2.8
(-3)
A 		20.3
(3)
A 		8.5
(-1)
A 		18
B 5.7
(-3)
A 		9
(0.8)
A 		7.1
(-1.4)
A 		10.9
(3)
A 		5
C 4.4
(-3)
A 		7.3
(-2.7)
A 		6.1
(-2.8)
A 		62.7
(3)
A 		58
avr 5.5
(-3) 		6.4
(-2.8) 		11.2
(-1.4) 		27.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 14.1
(-0.1)
A 		4.9
(-2.9)
A 		4.6
(-3)
A 		24.4
(3)
A 		6.3
(-2.5)
A 		5.1
(-2.8)
A 		20
B 12.8
(-1.9)
A 		22.5
(-0.1)
A 		36.8
(2.5)
A 		39.5
(3)
A 		33.6
(1.9)
A 		7
(-3)
A 		33
C 3.5
(-2.5)
A 		20.2
(1.9)
A 		24.5
(3)
A 		12
(-0.3)
A 		1.6
(-3)
A 		9.1
(-1)
A 		23
avr 10.1
(-2) 		15.9
(-0.1) 		22
(1.9) 		25.3
(3) 		13.8
(-0.8) 		7.1
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.3
(-0.8)
A 		0.6
(-3)
A 		5.3
(3)
A 		1.3
(-2.1)
A 		5
B 1.8
(-1.3)
A 		2.2
(2.1)
A 		1.6
(-3)
A 		2.3
(3)
A 		1
C 1.5
(-3)
A 		2.1
(-2.6)
A 		2.1
(-2.6)
A 		10.6
(3)
A 		9
avr 1.9
(-2.4) 		1.6
(-3) 		3
(-0.3) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.6
(-1.2)
A 		1.7
(-2.2)
A 		1
(-3)
A 		6.2
(3)
A 		1.9
(-2)
A 		1.2
(-2.8)
A 		5
B 4.5
(-2)
A 		7.5
(-0.4)
A 		8.9
(0.4)
A 		10.4
(1.2)
A 		13.7
(3)
A 		2.6
(-3)
A 		11
C 1.3
(-2.2)
A 		6.2
(3)
A 		6.2
(3)
A 		2.4
(-1)
A 		0.5
(-3)
A 		3
(-0.4)
A 		6
avr 2.8
(-2.3) 		5.1
(1.2) 		5.4
(1.7) 		6.3
(3) 		5.4
(1.7) 		2.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172316_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11961
Sequence Type Exemplar sequence
Representative Public ID W02D7.9 NCBI
Target Description W02D7.9 /REP_DB=WormBase Gene ID /WP=CE14452 /TR=O17531 /GB=AAB63938.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072748 NCBI Caenorhabditis elegans W02D7.9 (W02D7.9) mRNA, complete cds. 11/11 None
GENEFINDER00000037993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8328868:8333588:-1 11/11 None
W02D7.9 ENSEMBL cdna:known chromosome:CEL140:V:8328781:8329104:-1 gene:W02D7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8328781-8329105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02D7.9
Entrez Gene 189119 Entrez gene
SwissProt O17531 EMBL-EBI
WormBase CE14452 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60743 Hypothetical protein Y51B11A.1 [Caenorhabditis elegans] ref|NP_505150.1| Y51B11A.1 [Caenorhabditis elegans] 8.0E-66
blast NP_505149 W02D7.9 [Caenorhabditis elegans] gb|AAB63938.1| Hypothetical protein W02D7.9 [Caenorhabditis elegans] 9.0E-34
blast NP_505149 W02D7.9 [Caenorhabditis elegans] gb|AAB63938.1| Hypothetical protein W02D7.9 [Caenorhabditis elegans] 6.0E-26
blast CAB03859 Hypothetical protein C08E8.3 [Caenorhabditis elegans] ref|NP_507589.1| C08E8.3 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:172316_X_AT
cctcctcacaaaagcctatgcacgagggaccttcggatatttttggagctggttattttc
ccttattcctgtccatcgaaagaacttgaggagctccaacaaaggaagaaggggacttgc
tgcacaatggaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCTCACAAAAGCCTATGCACGA 496 267 30 Antisense
ACAAAAGCCTATGCACGAGGGACCT 159 111 37 Antisense
CCTATGCACGAGGGACCTTCGGATA 119 269 44 Antisense
GGGACCTTCGGATATTTTTGGAGCT 543 457 55 Antisense
CCTTCGGATATTTTTGGAGCTGGTT 139 269 59 Antisense
TGGAGCTGGTTATTTTCCCTTATTC 112 549 73 Antisense
TCCCTTATTCCTGTCCATCGAAAGA 132 597 88 Antisense
ATTCCTGTCCATCGAAAGAACTTGA 328 1 94 Antisense
GAACTTGAGGAGCTCCAACAAAGGA 196 345 111 Antisense
GGAAGAAGGGGACTTGCTGCACAAT 437 531 133 Antisense
GGGGACTTGCTGCACAATGGAAAAT 522 497 140 Antisense
Sequence Source Affymetrix Proprietary Database