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[172311_x_at]

Description F39E9.6 /REP_DB=WormBase Gene ID /WP=CE10108 /TR=O17115 /GB=AAB70371.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 1.4
(-3)
A
18.9
(1.3)
A
6.4
(-1.8)
A
25.9
(3)
A
25
B 1.1
(-2.9)
A
1
(-3)
A
1.5
(-2.7)
A
10.1
(3)
A
9
C 11.7
(-2.4)
A
22.4
(-0.7)
A
8.2
(-3)
A
44.5
(3)
A
36
avr 4.7
(-3)
14.1
(-0.4)
5.4
(-2.8)
26.8
(3)
22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.2
(-2.9)
A
1.5
(-3)
A
3
(-2.7)
A
11.3
(-1.2)
A
33.9
(3)
A
9.2
(-1.6)
A
32
B 2.1
(-3)
A
13.4
(0.1)
A
2.1
(-3)
A
7.3
(-1.6)
A
24
(3)
A
6
(-1.9)
A
22
C 1
(-2.9)
A
30.6
(3)
A
2.4
(-2.6)
A
23.8
(1.6)
A
1
(-2.9)
A
0.5
(-3)
A
30
avr 1.8
(-3)
15.2
(1.5)
2.5
(-2.8)
14.1
(1.1)
19.6
(3)
5.2
(-1.9)
18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-3)
A
4.1
(3)
A
1.7
(-1)
A
3.8
(2.5)
A
4
B 0.4
(-2.7)
A
0.3
(-3)
A
0.3
(-3)
A
2.2
(3)
A
2
C 3.9
(-1.7)
A
6.4
(1.6)
A
2.9
(-3)
A
7.5
(3)
A
5
avr 1.6
(-3)
3.6
(1.1)
1.6
(-3)
4.5
(3)
3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A
0.5
(-2.9)
A
0.7
(-2.8)
A
2.9
(-1.5)
A
10.2
(3)
A
2.2
(-1.9)
A
10
B 0.7
(-2.9)
A
4.4
(-0.5)
A
0.5
(-3)
A
1.9
(-2.1)
A
9.8
(3)
A
2.2
(-1.9)
A
9
C 0.4
(-2.9)
A
9.3
(3)
A
0.6
(-2.7)
A
4.8
(0)
A
0.3
(-2.9)
A
0.2
(-3)
A
9
avr 0.5
(-3)
4.7
(1)
0.6
(-2.9)
3.2
(-0.4)
6.8
(3)
1.5
(-2)
6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172311_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4997
Sequence Type Exemplar sequence
Representative Public ID F39E9.6 NCBI
Target Description F39E9.6 /REP_DB=WormBase Gene ID /WP=CE10108 /TR=O17115 /GB=AAB70371.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062102(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_062102 NCBI Caenorhabditis elegans F39E9.6 (F39E9.6) mRNA, complete cds. 11/11 None
F39E9.6 ENSEMBL cdna:known chromosome:CEL140:II:3310283:3311925:-1 gene:F39E9.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020876 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3310281-3311924(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39E9.6
Entrez Gene 173677 Entrez gene
SwissProt O17115 EMBL-EBI
WormBase CE10108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70371 Hypothetical protein F39E9.6 [Caenorhabditis elegans] ref|NP_494503.1| F39E9.6 [Caenorhabditis elegans] 2.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 2.4E-8
Sequence
Target Sequence
>C. ELEGANS:172311_X_AT
atagttgaagaaatggaggatccgaaaaaaaaacccgagctcaaaacaatttcagataaa
tttccgacgagcaattcaatttcagacagattgaagacaactttagtcaagtttgcgaag
gcattcaattgcccaattggatccccgat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATAGTTGAAGAAATGGAGGATCCGA 313 1 22 Antisense
AAACCCGAGCTCAAAACAATTTCAG 180 125 52 Antisense
CCCGAGCTCAAAACAATTTCAGATA 395 261 55 Antisense
ATTTCAGATAAATTTCCGACGAGCA 521 15 70 Antisense
ATTTCCGACGAGCAATTCAATTTCA 649 1 81 Antisense
GACGAGCAATTCAATTTCAGACAGA 498 379 87 Antisense
GACAGATTGAAGACAACTTTAGTCA 413 367 106 Antisense
ACTTTAGTCAAGTTTGCGAAGGCAT 224 87 121 Antisense
GTTTGCGAAGGCATTCAATTGCCCA 412 451 132 Antisense
GCGAAGGCATTCAATTGCCCAATTG 591 287 136 Antisense
TCAATTGCCCAATTGGATCCCCGAT 14 635 146 Antisense
Sequence Source Affymetrix Proprietary Database