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[172310_x_at]

Description Y9D1A.1 /REP_DB=WormBase Gene ID /WP=CE21357 /TR=Q9TYK9 /GB=AAD12847.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 45
(0.4)
A 		39.7
(-0.2)
A 		14.8
(-3)
A 		67.6
(3)
A 		53
B 87.2
(3)
P 		41.8
(-2.3)
A 		71.3
(1.1)
A 		35.7
(-3)
A 		52
C 77.2
(3)
M 		17.1
(-3)
A 		44.8
(-0.2)
A 		43.5
(-0.4)
A 		60
avr 69.8
(3) 		32.9
(-3) 		43.6
(-1.3) 		48.9
(-0.4) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 53.4
(-1.2)
A 		89
(1.8)
A 		49.3
(-1.6)
P 		45.2
(-1.9)
A 		32.3
(-3)
A 		102.7
(3)
M 		70
B 63.5
(-0.5)
A 		43.9
(-2.6)
A 		40.3
(-3)
A 		45.6
(-2.4)
A 		54
(-1.5)
A 		95.1
(3)
P 		55
C 69.8
(1.4)
A 		71.8
(1.6)
A 		64.1
(1)
A 		11.5
(-3)
A 		41.2
(-0.8)
A 		90.7
(3)
A 		79
avr 62.2
(-0.3) 		68.2
(0.3) 		51.2
(-1.3) 		34.1
(-3) 		42.5
(-2.2) 		96.2
(3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 16.4
(3)
A 		8.6
(-0.7)
A 		3.9
(-3)
A 		9.9
(-0.1)
A 		13
B 27.8
(3)
P 		10.3
(-2.2)
A 		16.5
(-0.4)
A 		7.6
(-3)
A 		20
C 25.5
(3)
M 		4.9
(-3)
A 		15.6
(0.1)
A 		7.3
(-2.3)
A 		21
avr 23.2
(3) 		7.9
(-3) 		12
(-1.4) 		8.3
(-2.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 9.8
(-3)
A 		31.6
(3)
A 		10.7
(-2.7)
P 		11.5
(-2.5)
A 		9.7
(-3)
A 		25
(1.2)
M 		22
B 22.1
(-0.1)
A 		14.6
(-1.9)
A 		9.8
(-3)
A 		12.1
(-2.5)
A 		21.9
(-0.2)
A 		35.5
(3)
P 		26
C 25.9
(2)
A 		21.9
(1.2)
A 		16.3
(-0)
A 		2.3
(-3)
A 		13.3
(-0.7)
A 		30.4
(3)
A 		28
avr 19.3
(-0) 		22.7
(0.9) 		12.3
(-2) 		8.6
(-3) 		15
(-1.2) 		30.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172310_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4092
Sequence Type Exemplar sequence
Representative Public ID Y9D1A.1 NCBI
Target Description Y9D1A.1 /REP_DB=WormBase Gene ID /WP=CE21357 /TR=Q9TYK9 /GB=AAD12847.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063157
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041246 ENSEMBL cdna:SNAP chromosome:CEL140:II:7445242:7450510:1 11/11 None
GENEFINDER00000041249 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7444906:7448561:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063158 2/11 Cross Hyb Matching Probes A 
NM_063157 3/11 Cross Hyb Matching Probes None
GENEFINDER00000041248 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015572 1/11 Cross Hyb Matching Probes None
Y9D1A.1 3/11 Cross Hyb Matching Probes None
Y9D1A.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7446597-7448468(+) 99.58 100.0
chrII:7446924-7448164(+) 54.48 54.48
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12846 Hypothetical protein Y9D1A.2 [Caenorhabditis elegans] ref|NP_495559.1| Y9D1A.2 [Caenorhabditis elegans] 2.0E-39
blast AAR85896 Hypothetical protein Y46H3C.7 [Caenorhabditis elegans] ref|NP_001024248.1| Y46H3C.7 [Caenorhabditis elegans] 3.0E-34
blast AAB65903 Hypothetical protein F29G9.1 [Caenorhabditis elegans] ref|NP_504563.2| F29G9.1 [Caenorhabditis elegans] 1.0E-31
blast AAD12847 Hypothetical protein Y9D1A.1 [Caenorhabditis elegans] ref|NP_495558.2| Y9D1A.1 [Caenorhabditis elegans] 1.0E-24
blast CAB60327 Hypothetical protein Y24F12A.4 [Caenorhabditis elegans] ref|NP_502190.1| Y24F12A.4 [Caenorhabditis elegans] 3.0E-24
blast AAY55893 Hypothetical protein Y51H7C.15 [Caenorhabditis elegans] ref|NP_001022460.1| Y51H7C.15 [Caenorhabditis elegans] 7.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041249 1 664-686
Sequence
Target Sequence 
>C. ELEGANS:172310_X_AT
ggatcgggtcggaaggatcgggccggaagggtcgggccggaaggatcaggccggaaggat
cgggacgagacgacgatggtgagagggagtccggaaacatctacaataaagacgacgaag
aaggatcgggtcggaaggatcgggtcggaaggatcggaacgagactacgatggtgagagg
gagtccggaaacatctacaataaagacgacgaagaaggatcgggtcggaaggatcgggcc
ggaagggtcgggccggaaggatcaggccggaaggatcgggacgagacgacgatgggcaga
gggagtccggaaacatctacaataaagacgacgaagaaggatcgggtcggaaggatcggg
tcggaaggatcggaacgagactacgatggtgagagggagtccggaaacatctgcgataaa
agcgacgacgacgaacaggatggatggatcggaatagatcagaatggatcgggatggttg
gatcgggagaaggcgataaccacggcaacgacgacgatgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGGGTCGGAAGGATCGGGCCG 237 495 586 Antisense
GAAGGGTCGGGCCGGAAGGATCAGG 571 325 611 Antisense
GAGGGAGTCCGGAAACATCTACAAT 639 401 668 Antisense
GAGAGGGAGTCCGGAAACATCTACA 544 393 760 Antisense
GGGTCGGGCCGGAAGGATCAGGCCG 42 1 830 Antisense
GGGACGAGACGACGATGGGCAGAGG 241 495 863 Antisense
GGGAGTCCGGAAACATCTACAATAA 281 493 886 Antisense
GGATCGGGTCGGAAGGATCGGGTCG 238 495 924 Antisense
GAGGGAGTCCGGAAACATCTGCGAT 638 401 978 Antisense
GGGAGAAGGCGATAACCACGGCAAC 443 495 1070 Antisense
ACCACGGCAACGACGACGATGACGA 364 85 1084 Antisense
Sequence Source Affymetrix Proprietary Database