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[172308_x_at]

Description F53C3.9 /REP_DB=WormBase Gene ID /WP=CE19447 /TR=Q9TXT0 /GB=AAC67460.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 42.1
(2.8)
A 		12.3
(-3)
A 		22.4
(-1)
A 		42.9
(3)
A 		31
B 5.2
(-3)
A 		31.1
(3)
A 		19.3
(0.3)
A 		6.8
(-2.6)
A 		26
C 18.1
(-1.9)
A 		25.1
(-1.3)
A 		6
(-3)
A 		72.1
(3)
A 		66
avr 21.8
(-1.6) 		22.8
(-1.3) 		15.9
(-3) 		40.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 10.7
(-2.9)
A 		11.3
(-2.8)
A 		71.1
(3)
A 		44.1
(0.4)
A 		9.4
(-3)
A 		14
(-2.6)
A 		62
B 30.5
(1.9)
A 		7.2
(-3)
A 		33.6
(2.5)
A 		36
(3)
A 		17.7
(-0.8)
A 		21.3
(-0.1)
A 		29
C 15.1
(-1.3)
A 		30.4
(0.7)
A 		46.1
(2.7)
A 		48.5
(3)
A 		2.2
(-3)
A 		43.7
(2.4)
A 		46
avr 18.8
(-1.7) 		16.3
(-2) 		50.3
(3) 		42.9
(1.9) 		9.8
(-3) 		26.3
(-0.6) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.3
(3)
A 		2.7
(-3)
A 		5.9
(-1.5)
A 		6.3
(-1.3)
A 		13
B 1.6
(-2.9)
A 		7.7
(3)
A 		4.5
(-0.1)
A 		1.5
(-3)
A 		6
C 6
(-0.7)
A 		7.2
(0)
A 		2.1
(-3)
A 		12.2
(3)
A 		10
avr 7.6
(3) 		5.9
(0) 		4.2
(-3) 		6.7
(1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2
(-3)
A 		4
(-2.1)
A 		15.5
(3)
A 		11.2
(1.1)
A 		2.9
(-2.6)
A 		3.4
(-2.4)
A 		14
B 10.6
(3)
A 		2.4
(-3)
A 		8.2
(1.2)
A 		9.5
(2.2)
A 		7.2
(0.5)
A 		7.9
(1)
A 		8
C 5.6
(-0.9)
A 		9.3
(0.7)
A 		11.7
(1.7)
A 		9.7
(0.9)
A 		0.7
(-3)
A 		14.6
(3)
A 		14
avr 6.1
(-1.2) 		5.2
(-1.8) 		11.8
(3) 		10.1
(1.8) 		3.6
(-3) 		8.6
(0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172308_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4605
Sequence Type Exemplar sequence
Representative Public ID F53C3.9 NCBI
Target Description F53C3.9 /REP_DB=WormBase Gene ID /WP=CE19447 /TR=Q9TXT0 /GB=AAC67460.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062283 NCBI Caenorhabditis elegans F53C3.9 (F53C3.9) mRNA, complete cds. 11/11 A 
F53C3.9 ENSEMBL cdna:known chromosome:CEL140:II:3885419:3886876:1 gene:F53C3.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012190 1/11 Cross Hyb Matching Probes None
ZK488.3 2/11 Cross Hyb Matching Probes None
ZK218.10 3/11 Cross Hyb Matching Probes None
F59A1.5 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F53C3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 0.0
blast T23706 hypothetical protein M04C7.2 - Caenorhabditis elegans 0.0
blast S42831 F40F12.2 protein - Caenorhabditis elegans 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.7E-81
Sequence
Target Sequence 
>C. ELEGANS:172308_X_AT
tccacagtccgcgatttaggtcttatcactgattgcaaattaaactttgaacctcatatc
ataaaaattagctgcctagccatgctaagggctaagcaaattctcaaagcgttctcttct
aattcccacaagttttatagccacttatttaaaacctacgttgcccccatcattaactat
tgctctgagatctactccccttccccaaactcctcactctctgccatacttgaaaaacca
ctaaggaccttcaccaaacgtgtcctgcaaagatgcaatgttaaattcacttcttacgaa
aacagactgtgcatcatggatctttactccaccagacacactagaattaaagctcaaatg
aagctattatatagacttcttaccggttcttcacatttctctaaattaactcagtttgta
aagttctctaattccaataggaggcccatgattctggttaggaaagacacatgcacctct
cat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACAGTCCGCGATTTAGGTCTTA 176 589 877 Antisense
GCAAATTCTCAAAGCGTTCTCTTCT 546 317 972 Antisense
TTCTCTTCTAATTCCCACAAGTTTT 249 687 988 Antisense
ACTATTGCTCTGAGATCTACTCCCC 101 103 1052 Antisense
CACTCTCTGCCATACTTGAAAAACC 655 197 1091 Antisense
TCACCAAACGTGTCCTGCAAAGATG 273 625 1127 Antisense
GCAATGTTAAATTCACTTCTTACGA 548 321 1151 Antisense
ACTGTGCATCATGGATCTTTACTCC 509 97 1182 Antisense
ATGGATCTTTACTCCACCAGACACA 646 51 1192 Antisense
TATAGACTTCTTACCGGTTCTTCAC 652 659 1246 Antisense
TAGGAAAGACACATGCACCTCTCAT 575 653 1335 Antisense
Sequence Source Affymetrix Proprietary Database