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[172307_x_at]

Description F20B4.7 /REP_DB=WormBase Gene ID /WP=CE09493 /TR=O45384 /GB=AAC48148.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 05      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 125.2
(0)
A 		73.2
(-3)
A 		79.7
(-2.6)
A 		176.5
(3)
A 		103
B 133
(3)
A 		50.7
(-3)
A 		78.7
(-1)
A 		60.4
(-2.3)
A 		82
C 148.9
(-2)
A 		125.4
(-2.4)
A 		95.3
(-3)
A 		402
(3)
P 		307
avr 135.7
(-0.6) 		83.1
(-3) 		84.6
(-2.9) 		213
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 90.2
(3)
A 		50.3
(0.1)
A 		73
(1.7)
A 		49.7
(0)
A 		44.2
(-0.4)
A 		7.9
(-3)
A 		82
B 75.5
(2.8)
A 		78
(3)
A 		69.5
(2.3)
A 		53.2
(0.9)
A 		44.6
(0.2)
A 		7.1
(-3)
A 		71
C 71
(-0.2)
A 		145.7
(3)
P 		34.7
(-1.8)
A 		71.7
(-0.2)
A 		6
(-3)
A 		10
(-2.8)
A 		140
avr 78.9
(2.1) 		91.3
(3) 		59.1
(0.7) 		58.2
(0.6) 		31.6
(-1.3) 		8.3
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 45.6
(3)
A 		15.9
(-3)
A 		20.8
(-2)
A 		25.8
(-1)
A 		30
B 42.4
(3)
A 		12.5
(-3)
A 		18.2
(-1.9)
A 		12.9
(-2.9)
A 		30
C 49.3
(-0.2)
A 		36
(-2.5)
A 		33.2
(-3)
A 		67.8
(3)
P 		35
avr 45.8
(3) 		21.5
(-3) 		24.1
(-2.4) 		35.5
(0.5) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 16.6
(2.5)
A 		17.9
(3)
A 		15.9
(2.3)
A 		12.6
(1)
A 		13.3
(1.3)
A 		1.9
(-3)
A 		16
B 26.3
(3)
A 		26
(2.9)
A 		16.9
(0.6)
A 		14.1
(-0.1)
A 		18.1
(0.9)
A 		2.6
(-3)
A 		24
C 26.3
(0.4)
A 		44.5
(3)
P 		8.8
(-2)
A 		14.4
(-1.2)
A 		1.9
(-3)
A 		3.3
(-2.8)
A 		43
avr 23.1
(1.6) 		29.5
(3) 		13.9
(-0.5) 		13.7
(-0.5) 		11.1
(-1.1) 		2.6
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172307_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17852
Sequence Type Exemplar sequence
Representative Public ID F20B4.7 NCBI
Target Description F20B4.7 /REP_DB=WormBase Gene ID /WP=CE09493 /TR=O45384 /GB=AAC48148.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078455 NCBI Caenorhabditis elegans F20B4.7 (F20B4.7) mRNA, complete cds. 11/11 None
SNAP00000007929 ENSEMBL cdna:SNAP chromosome:CEL140:X:17689657:17692332:-1 11/11 None
F20B4.7 ENSEMBL cdna:known chromosome:CEL140:X:17689657:17692332:-1 gene:F20B4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078379 6/11 Cross Hyb Matching Probes A 
NM_077119 4/11 Cross Hyb Matching Probes A 
NM_064793 7/11 Cross Hyb Matching Probes A 
NM_071125 4/11 Cross Hyb Matching Probes None
NM_066128 6/11 Cross Hyb Matching Probes A 
NM_075970 4/11 Cross Hyb Matching Probes A 
NM_058672 6/11 Cross Hyb Matching Probes A 
NM_061681 4/11 Cross Hyb Matching Probes A 
NM_059054 6/11 Cross Hyb Matching Probes A 
GENEFINDER00000005898 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043553 2/11 Cross Hyb Matching Probes None
SNAP00000043540 7/11 Cross Hyb Matching Probes None
SNAP00000039702 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039704 6/11 Cross Hyb Matching Probes None
SNAP00000012049 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012051 4/11 Cross Hyb Matching Probes None
SNAP00000043894 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043904 2/11 Cross Hyb Matching Probes None
SNAP00000008916 1/11 Cross Hyb Matching Probes None
SNAP00000030989 6/11 Cross Hyb Matching Probes None
GENEFINDER00000030995 2/11 Cross Hyb Matching Probes None
SNAP00000031879 7/11 Cross Hyb Matching Probes None
GENEFINDER00000031882 7/11 Cross Hyb Matching Probes None
SNAP00000000198 5/11 Cross Hyb Matching Probes None
GENEFINDER00000000200 3/11 Cross Hyb Matching Probes None
SNAP00000006732 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006742 7/11 Cross Hyb Matching Probes None
SNAP00000028592 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028599 6/11 Cross Hyb Matching Probes None
SNAP00000033705 4/11 Cross Hyb Matching Probes None
GENEFINDER00000033772 3/11 Cross Hyb Matching Probes None
SNAP00000037693 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037709 1/11 Cross Hyb Matching Probes None
SNAP00000039289 5/11 Cross Hyb Matching Probes None
GENEFINDER00000039297 5/11 Cross Hyb Matching Probes None
SNAP00000043497 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043506 6/11 Cross Hyb Matching Probes None
SNAP00000001526 5/11 Cross Hyb Matching Probes None
GENEFINDER00000001539 5/11 Cross Hyb Matching Probes None
SNAP00000003414 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003424 4/11 Cross Hyb Matching Probes None
SNAP00000028144 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028157 4/11 Cross Hyb Matching Probes None
SNAP00000032429 4/11 Cross Hyb Matching Probes None
GENEFINDER00000032435 4/11 Cross Hyb Matching Probes None
SNAP00000012632 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034063 2/11 Cross Hyb Matching Probes None
SNAP00000034055 6/11 Cross Hyb Matching Probes None
GENEFINDER00000007942 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009534 7/11 Cross Hyb Matching Probes None
SNAP00000009529 7/11 Cross Hyb Matching Probes None
SNAP00000043287 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043303 4/11 Cross Hyb Matching Probes None
SNAP00000003534 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003544 5/11 Cross Hyb Matching Probes None
SNAP00000035247 4/11 Cross Hyb Matching Probes None
GENEFINDER00000035253 4/11 Cross Hyb Matching Probes None
SNAP00000022302 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022354 5/11 Cross Hyb Matching Probes None
SNAP00000022319 3/11 Cross Hyb Matching Probes None
Y71F9AL.3 6/11 Cross Hyb Matching Probes A 
F54D7.1 6/11 Cross Hyb Matching Probes A 
C08F1.9 4/11 Cross Hyb Matching Probes A 
Y53C12A.5 2/11 Cross Hyb Matching Probes None
K10F12.5 7/11 Cross Hyb Matching Probes A 
C06E8.4 6/11 Cross Hyb Matching Probes A 
Y105C5A.7 5/11 Cross Hyb Matching Probes None
Y32G9A.9 4/11 Cross Hyb Matching Probes None
F44G3.3 4/11 Cross Hyb Matching Probes A 
Y102A11A.4 4/11 Cross Hyb Matching Probes A 
C24A3.7 4/11 Cross Hyb Matching Probes A 
B0302.3 6/11 Cross Hyb Matching Probes A 
C33E10.4 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F20B4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48148 Hypothetical protein F20B4.7 [Caenorhabditis elegans] ref|NP_510856.1| F20B4.7 [Caenorhabditis elegans] 0.0
blast AAC72298 reverse transcriptase [Caenorhabditis elegans] 0.0
blast AAB71003 Hypothetical protein K10F12.5 [Caenorhabditis elegans] ref|NP_497194.1| K10F12.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 4.8E-16
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 5.4E-59
Sequence
Target Sequence 
>C. ELEGANS:172307_X_AT
gacgtcgacgagtacatctacctcaacgcccaaaacaacttgatgccggaaatccaccga
agacgtcgagcagcctgggctgcattcattggaatcaagaatactaccgactccatcacc
gacaagaagattcgtgcgaatctgtttgactcaattatccttccagcgctcacctacggt
tcagaagcctggacattcaccaaagctctatccgaacgagtacgaatcacacatgcctcc
ctagaaagacggcttgttgggataacactcacccaacaacgggagcgagatctccatcga
gaagacattcgtacgatgtctctagtcagggatccgctcaatttcgtgaaaaagaggaag
ctaggatgggctggacacgttgcgagaaggaaagacggaagatggaccacgttgatgaca
gaatggcgcccatatggatggaaaagacctgttggaaggccgccgatgcgatggactgat
tcgctgcgaaaggagatcaccactcgtgacgcagacggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCGACGAGTACATCTACCTCA 605 377 2086 Antisense
CAGCCTGGGCTGCATTCATTGGAAT 342 203 2156 Antisense
ATCAAGAATACTACCGACTCCATCA 149 27 2179 Antisense
ATCTGTTTGACTCAATTATCCTTCC 196 35 2225 Antisense
GCTCACCTACGGTTCAGAAGCCTGG 206 301 2253 Antisense
GAAGCCTGGACATTCACCAAAGCTC 248 345 2269 Antisense
ATTCGTACGATGTCTCTAGTCAGGG 123 3 2392 Antisense
TAGTCAGGGATCCGCTCAATTTCGT 602 653 2408 Antisense
GCTAGGATGGGCTGGACACGTTGCG 444 299 2445 Antisense
GGCCGCCGATGCGATGGACTGATTC 84 543 2543 Antisense
TCACCACTCGTGACGCAGACGGAGA 146 625 2582 Antisense
Sequence Source Affymetrix Proprietary Database