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[172305_x_at]

Description Y40B1B.7 /REP_DB=WormBase Gene ID /WP=CE21790 /TR=Q9XWP4 /GB=CAA21606.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 78      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7317
1 2 3 4 range
A 1863.4
(-2.2)
P 		1510.7
(-2.5)
P 		907.2
(-3)
P 		8224
(3)
P 		7317
B 2086.1
(-2.2)
P 		1236
(-3)
P 		1329
(-2.9)
P 		7612.9
(3)
P 		6377
C 2219.4
(-2.1)
P 		1559
(-2.7)
P 		1191.4
(-3)
P 		7969.9
(3)
P 		6779
avr 2056.3
(-2.2) 		1435.2
(-2.7) 		1142.5
(-3) 		7935.6
(3) 		6793

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1658
1 2 3 4 5 6 range
A 1103.4
(-1.9)
P 		910.2
(-3)
P 		1998.7
(3)
P 		948.2
(-2.8)
P 		1437.9
(-0.1)
P 		1048.6
(-2.2)
P 		1089
B 2135.3
(2.4)
P 		1566.1
(-0.7)
P 		1878.9
(1)
P 		1143.3
(-3)
P 		1641.8
(-0.3)
P 		2237.5
(3)
P 		1094
C 1846.8
(0.6)
P 		1497.4
(-0.7)
P 		865
(-3)
P 		1082.4
(-2.2)
P 		1380.9
(-1.1)
P 		2522.5
(3)
P 		1658
avr 1695.2
(1.4) 		1324.6
(-1.2) 		1580.9
(0.6) 		1058
(-3) 		1486.9
(-0.1) 		1936.2
(3) 		878
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1385
1 2 3 4 range
A 678.4
(-0.3)
P 		327.9
(-2.4)
P 		237.2
(-3)
P 		1203.8
(3)
P 		967
B 665.2
(-1.4)
P 		305.3
(-3)
P 		308
(-3)
P 		1622.3
(3)
P 		1317
C 734.7
(-0.9)
P 		448.2
(-2.8)
P 		415.3
(-3)
P 		1343.9
(3)
P 		929
avr 692.8
(-0.9) 		360.5
(-2.8) 		320.2
(-3) 		1390
(3) 		1070

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 641
1 2 3 4 5 6 range
A 203.4
(-3)
P 		323.7
(0.1)
P 		435.3
(3)
P 		240.5
(-2)
P 		433.9
(3)
P 		255.3
(-1.7)
P 		232
B 743
(2)
P 		521.3
(-0.5)
P 		456.3
(-1.3)
P 		302.8
(-3)
P 		667
(1.1)
P 		834.4
(3)
P 		532
C 684.5
(1.5)
P 		456.9
(-0.7)
P 		220.2
(-3)
P 		217.7
(-3)
P 		446.8
(-0.8)
P 		844.4
(3)
P 		627
avr 543.6
(1.4) 		434
(-0.2) 		370.6
(-1.2) 		253.7
(-3) 		515.9
(1) 		644.7
(3) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172305_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.487
Sequence Type Exemplar sequence
Representative Public ID Y40B1B.7 NCBI
Target Description Y40B1B.7 /REP_DB=WormBase Gene ID /WP=CE21790 /TR=Q9XWP4 /GB=CAA21606.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060962 NCBI Caenorhabditis elegans Y40B1B.7 (Y40B1B.7) mRNA, complete cds. 11/11 None
GENEFINDER00000004557 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13434675:13436583:-1 10/11 None
Y40B1B.7 ENSEMBL cdna:known chromosome:CEL140:I:13434603:13436592:-1 gene:Y40B1B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004546 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13434583-13436514(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40B1B.7
Entrez Gene 173211 Entrez gene
SwissProt Q9XWP4 EMBL-EBI
WormBase CE21790 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25195.1.S1_AT hypothetical LOC483806 cfa
DROSOPHILA_2:1624635_AT dm
DROSGENOME1:145381_AT dm
HG-U133_PLUS_2:203119_AT hypothetical protein MGC2574 hs
HG-U133A:203119_AT hypothetical protein MGC2574 hs
HG-U133A_2:203119_AT hypothetical protein MGC2574 hs
HG-U95AV2:34805_AT hypothetical protein MGC2574 hs
HU35KSUBA:RC_AA428293_AT hypothetical protein MGC2574 hs
U133_X3P:G13129103_3P_AT hypothetical protein MGC2574 hs
HG-U95D:76506_AT hypothetical protein MGC2574 hs
MU11KSUBA:AA672312_S_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MG-U74AV2:103768_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MG-U74BV2:109759_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MOE430A:1452414_S_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MOUSE430A_2:1452414_S_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MOUSE430_2:1452414_S_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MOE430A:1454197_A_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MOUSE430A_2:1454197_A_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MOUSE430_2:1454197_A_AT DNA segment, Chr 19, ERATO Doi 678, expressed mm
MU19KSUBC:TC37718_AT DNA segment, Chr 19, ERATO Doi 678, expressed (D19Ertd678e), mRNA mm
MU19KSUBC:TC37718_G_AT DNA segment, Chr 19, ERATO Doi 678, expressed (D19Ertd678e), mRNA mm
RG-U34C:RC_AI103320_AT similar to hypothetical protein MGC2574 rn
RAE230A:1375551_AT similar to hypothetical protein MGC2574 rn
RAT230_2:1375551_AT similar to hypothetical protein MGC2574 rn
RAE230B:1397255_AT similar to hypothetical protein MGC2574 rn
RAT230_2:1397255_AT similar to hypothetical protein MGC2574 rn
Protein Similarities
Method ID Description E-Value
blast CAA21606 Hypothetical protein Y40B1B.7 [Caenorhabditis elegans] ref|NP_493363.1| Y40B1B.7 [Caenorhabditis elegans] 4.0E-37
blast CAA21606 Hypothetical protein Y40B1B.7 [Caenorhabditis elegans] ref|NP_493363.1| Y40B1B.7 [Caenorhabditis elegans] 8.0E-33
blast CAE63532 Hypothetical protein CBG08012 [Caenorhabditis briggsae] 3.0E-28
blast CAE63532 Hypothetical protein CBG08012 [Caenorhabditis briggsae] 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:172305_X_AT
tcaactggcgcaaatcttctcgtcatgaacgacacatgcaagtcaaatcgttggtggaag
acgaaacaggagaaaaagcactctgaaatcaaaaaggtgaagaccctaaaatccacgtgg
gacaagaaaatggagttgaaagcgaaaaaagatatggtcaaaagggttcaggacaatatt
cgagagaaacaagtacaagaacgacaagaaaagaaggaaagaaaagtggaacaggagaag
cgacggctggaaaacgagagaaaggctgaaattgtgcagaaaatcacgaaaatccacaag
ctgaaaaagacgaagaaacgccagctccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTGGCGCAAATCTTCTCGTCA 221 631 16 Antisense
CTTCTCGTCATGAACGACACATGCA 381 219 31 Antisense
GACACATGCAAGTCAAATCGTTGGT 518 365 46 Antisense
GGTGAAGACCCTAAAATCCACGTGG 391 499 111 Antisense
GACCCTAAAATCCACGTGGGACAAG 452 381 117 Antisense
AAGATATGGTCAAAAGGGTTCAGGA 514 151 164 Antisense
AGGGTTCAGGACAATATTCGAGAGA 381 57 178 Antisense
AAGTGGAACAGGAGAAGCGACGGCT 393 157 239 Antisense
GAAGCGACGGCTGGAAAACGAGAGA 489 343 252 Antisense
GAAAATCACGAAAATCCACAAGCTG 662 353 294 Antisense
AAAGACGAAGAAACGCCAGCTCCGC 556 123 321 Antisense
Sequence Source Affymetrix Proprietary Database